Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.
  • page settings
  • hide sidebar
  • show empty fields
  • layout
  • (too narrow)
  • open all
  • close all
  • default
Species » C. elegans(Genome assembly: WBcel235)

Variation » gk299379

  • Human diseases

  • Phenotypes

  • References

  • Tree Display

  • My Favorites

  • My Library

  • Comments on gk299379 (0)

  • Overview

    gk299379

    Species:
    Caenorhabditis elegans
    Status:
    Live
    Gene:
    Other names:
    K11E4.7:n.61C>T, K11E4.t4.1:n.22G>A, K11E4.4a.1:c.1349+135G>A
    Comparative info:
    Alliance of Genome Resources
    WormBase ID:
    WBVar00522622
    Allele: substitution

    Remarks:

  • Genetics

    Loading...

  • Isolation

    Laboratory:
    (Donald Moerman)
    Isolated By (author):
    Isolated By:
    External Source:
    Date Isolated:
    Mutagen:
    Isolated Via Forward Genetics:
    Isolated Via Reverse Genetics:
    Transposon Excision:
    Transposon Insertion:
    Derived From:
    Derivate:

  • Location

    Comparative info:
    Alliance of Genome Resources
    Genetic position:
    X:14.49 +/- 0.000 cM (interpolated)
    Genomic position:
    X:13729926..13729926
    Genome Browser:
    Launch full Genome Browser window X:13729926..13729926 (Legacy JBrowse 1 link: X:13729926..13729926)
    JBrowse 2-driven fully functional genome browser. Explore via the menu in the upper left corner
    This is where it should be


    Legacy Genome Browser image
    JBrowse 1

  • Molecular Details

    Comparative info:
    Alliance of Genome Resources
    Variation Type:
    Allele: substitution
    Sequencing Status:
    Sequenced
    Nucleotide Change:
    G/A (wild type / variant)
    Protein Change:
    K11E4.4a ()
    Flanking PCR Products:
    Polymorphism type:
    Strain:
    VC20189
    Polymorphism status:
    Assays:
    Sequence:

    Note: sequence is reported on the (+) strand.

    red = mutation
    yellow = flanking sequence

    No sequence data available for download
    No sequence data available for download
    Sequence:
    Loading...
    CGH Flanking Probes:
    5' flank --
                 -- 3' flank
    Deletion Verification:
    Features Affected:
    Chromosome: X
    Genes: K11E4.7, K11E4.t4, pix-1
    Predicted CDS (1)
    Transcript Affects feature start feature stop start relative to feature stop relative to feature
    K11E4.4a137273021373342126252625
    Transcripts (3)
    Transcript VEP consequence VEP impact PolyPhen prediction SIFT prediction CDS CDS position cDNA position Protein position Codon (WT/mutant) Amino acid (WT/mutant) Location exon Location intron HGVSc HGVSp
    K11E4.4a.1intron variantmodifier12/16K11E4.4a.1:c.1349+135G>A
    K11E4.7non coding transcript exon variantmodifier611/1K11E4.7:n.61C>T
    K11E4.t4non coding transcript exon variantmodifier221/1K11E4.t4.1:n.22G>A
    Clone (1)
    Transcript feature start feature stop start relative to feature stop relative to feature
    K11E413714080137480731584715847
    Detection Method:
    Affects Splice Site:
    Causes Frameshift: