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Overview
tm2423
Species:
Caenorhabditis elegans
Status:
Live
Gene:
Other names:
CE47745:p.Asn113LysfsTer13, Y37A1B.2b.1:c.599_810del, Y37A1B.2c.1:c.521_732del, CE32247:p.Asn174LysfsTer13, Y37A1B.2f.1:c.338_549del, Y37A1B.2d.1:c.521_732del, CE32245:p.Asn200LysfsTer13, CE32246:p.Asn174LysfsTer13
WormBase ID:
WBVar00251310
Allele: deletion
Remarks:
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.
Paper evidence: The C. elegans Deletion Mutant Consortium et al., 2012
evidence
89961/89962-90173/90174 (212 bp deletion)
Isolation
Isolated By (author):
Isolated By:
External Source:
Date Isolated:
Mutagen:
evidence:text:TMP/UV
Isolated Via Forward Genetics:
Isolated Via Reverse Genetics:
Transposon Excision:
Transposon Insertion:
Derived From:
Derivate:
Location
Genomic position:
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Molecular Details
Variation Type:
Allele: deletion
Sequencing Status:
Sequenced
Nucleotide Change:
212 bp deletion
Protein Change:
Y37A1B.2d (NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X)
Y37A1B.2g ()
Y37A1B.2f (NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X)
Y37A1B.2c (NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X)
Y37A1B.2h ()
Y37A1B.2b (NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X)
Y37A1B.2g ()
Y37A1B.2f (NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X)
Y37A1B.2c (NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X)
Y37A1B.2h ()
Y37A1B.2b (NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X)
Flanking PCR Products:
Polymorphism type:
Strain:
Polymorphism status:
Assays:
Sequence-only assay
Verified PCR product: | tm2423_internal |
Left Oligo: | CTTCGTGTGCGCATCGAATA |
Right Oligo: | GTAGCCACTCGGAACACGGT |
Sequence-only assay
Verified PCR product: | tm2423_external |
Left Oligo: | GCACTGGTTCCATGTCATTC |
Right Oligo: | TGACCTCAGCCGTAGCCACT |
Sequence:
Note: sequence is reported on the (+) strand.
red = mutation
yellow = flanking sequence
No sequence data available for download
No sequence data available for download
Sequence:

CGH Flanking Probes:
5' flank --
-- 3' flank
-- 3' flank
Deletion Verification:
Features Affected:
Chromosome: IV
Gene: lst-4
Gene: lst-4
Interactor (1)
Predicted CDSs (6)
Transcripts (6)
Transcript | VEP consequence | VEP impact | PolyPhen prediction | SIFT prediction | CDS | CDS position | cDNA position | Protein position | Codon (WT/mutant) | Amino acid (WT/mutant) | Location exon | Location intron | HGVSc | HGVSp |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Y37A1B.2d.1 | frameshift variant | high | Y37A1B.2d | 521-732 | 531-742 | 174-244 | aATAAGGTCAACAAGAACATCAATCGATTCTCGAATTTTGTAAAGTCCGGAGTCGAAGCGTACGTGATTGGTGAATCAAAGACCACCTCACAGATTAGTGAACGACATGAAGTTGTGATGAACAATGGAATTATTCAATGGAAACCGATTCAACAGTACTACACGTGTATAGTGGATAAACCGAAGAAAGAGTCAAAGCTGAAAGGGCTGAAG/a | NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X | 5/11 | Y37A1B.2d.1:c.521_732del | CE32247:p.Asn174LysfsTer13 | |||
Y37A1B.2g.1 | coding sequence variant,5 prime UTR variant | modifier | Y37A1B.2g | ?-96 | ?-96 | ?-32 | 1/6 | |||||||
Y37A1B.2f.1 | frameshift variant | high | Y37A1B.2f | 338-549 | 341-552 | 113-183 | aATAAGGTCAACAAGAACATCAATCGATTCTCGAATTTTGTAAAGTCCGGAGTCGAAGCGTACGTGATTGGTGAATCAAAGACCACCTCACAGATTAGTGAACGACATGAAGTTGTGATGAACAATGGAATTATTCAATGGAAACCGATTCAACAGTACTACACGTGTATAGTGGATAAACCGAAGAAAGAGTCAAAGCTGAAAGGGCTGAAG/a | NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X | 4/10 | Y37A1B.2f.1:c.338_549del | CE47745:p.Asn113LysfsTer13 | |||
Y37A1B.2c.1 | frameshift variant | high | Y37A1B.2c | 521-732 | 525-736 | 174-244 | aATAAGGTCAACAAGAACATCAATCGATTCTCGAATTTTGTAAAGTCCGGAGTCGAAGCGTACGTGATTGGTGAATCAAAGACCACCTCACAGATTAGTGAACGACATGAAGTTGTGATGAACAATGGAATTATTCAATGGAAACCGATTCAACAGTACTACACGTGTATAGTGGATAAACCGAAGAAAGAGTCAAAGCTGAAAGGGCTGAAG/a | NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X | 5/11 | Y37A1B.2c.1:c.521_732del | CE32246:p.Asn174LysfsTer13 | |||
Y37A1B.2h.1 | coding sequence variant,5 prime UTR variant | modifier | Y37A1B.2h | ?-96 | ?-96 | ?-32 | 1/6 | |||||||
Y37A1B.2b.1 | frameshift variant | high | Y37A1B.2b | 599-810 | 599-810 | 200-270 | aATAAGGTCAACAAGAACATCAATCGATTCTCGAATTTTGTAAAGTCCGGAGTCGAAGCGTACGTGATTGGTGAATCAAAGACCACCTCACAGATTAGTGAACGACATGAAGTTGTGATGAACAATGGAATTATTCAATGGAAACCGATTCAACAGTACTACACGTGTATAGTGGATAAACCGAAGAAAGAGTCAAAGCTGAAAGGGCTGAAG/a | NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X | 3/9 | Y37A1B.2b.1:c.599_810del | CE32245:p.Asn200LysfsTer13 |
Clone (1)
Transcript | feature start | feature stop | start relative to feature | stop relative to feature |
---|---|---|---|---|
Y37A1B | 13973155 | 14072237 | 89962 | 90173 |
Detection Method:
Affects Splice Site:
Causes Frameshift:
NKVNKNINRFSNFVKSGVEAYVIGESKTTSQISERHEVVMNNGIIQWKPIQQYYTCIVDKPKKESKLKGLK/X