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Species » C. elegans(Genome assembly: WBcel235)

Variation » ok1985

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  • Comments on ok1985 (0)

  • Overview

    ok1985

    Species:
    Caenorhabditis elegans
    Status:
    Live
    Gene:
    cyp-35A5
    Other names:
    Comparative info:
    Alliance of Genome Resources
    WormBase ID:
    WBVar00093179
    Allele: deletion

    Remarks:

    Sequenced by the C. elegans Gene Knockout Consortium
    evidence

  • Genetics

    Loading...

  • Isolation

    Laboratory:
    (Robert Barstead)
    Isolated By (author):
    Isolated By:
    Robert Barstead
    External Source:
    Date Isolated:
    Mutagen:
    evidence:text:EMS
    Isolated Via Forward Genetics:
    Isolated Via Reverse Genetics:
    Transposon Excision:
    Transposon Insertion:
    Derived From:
    Derivate:

  • Location

    Comparative info:
    Alliance of Genome Resources
    Genetic position:
    V:-7.50 +/- 0.003 cM (interpolated)
    Genomic position:
    V:3937831..3938637
    Genome Browser:
    Launch full Genome Browser window V:3937831..3938637 (Legacy JBrowse 1 link: V:3937831..3938637)
    JBrowse 2-driven fully functional genome browser. Explore via the menu in the upper left corner
    This is where it should be


    Legacy Genome Browser image
    JBrowse 1

  • Molecular Details

    Comparative info:
    Alliance of Genome Resources
    Variation Type:
    Allele: deletion
    Sequencing Status:
    Sequenced
    Nucleotide Change:
    807 bp deletion
    Protein Change:
    K07C6.5 ()
    Flanking PCR Products:
    ok1985_internal, ok1985_external
    Polymorphism type:
    Strain:
    RB1613
    Polymorphism status:
    Assays:
    Sequence-only assay
    Verified PCR product:ok1985_internal
    Left Oligo:ccgcccttaaaaagttaccc
    Right Oligo:aaacaaatcccaccgacaaa

    Sequence-only assay
    Verified PCR product:ok1985_external
    Left Oligo:ctcggcttgaataatgggaa
    Right Oligo:aaactacgctttggcgagaa

    Sequence:

    Note: sequence is reported on the (+) strand.

    red = mutation
    yellow = flanking sequence

    No sequence data available for download
    No sequence data available for download
    Sequence:
    Loading...
    CGH Flanking Probes:
    5' flank --
                 -- 3' flank
    Deletion Verification:
    Features Affected:
    Chromosome: V
    Gene: cyp-35A5
    Predicted CDS (1)
    Transcript Affects feature start feature stop start relative to feature stop relative to feature
    K07C6.53936396393842514362242
    Transcript (1)
    Transcript VEP consequence VEP impact PolyPhen prediction SIFT prediction CDS CDS position cDNA position Protein position Codon (WT/mutant) Amino acid (WT/mutant) Location exon Location intron HGVSc HGVSp
    K07C6.5.1splice acceptor variant,splice donor variant,coding sequence variant,3 prime UTR variant,intron varianthighK07C6.5932-?1002-?311-?7-9/97/8
    Clone (1)
    Transcript feature start feature stop start relative to feature stop relative to feature
    K07C6391238139491692545126257
    Detection Method:
    Affects Splice Site:
    Causes Frameshift: