- WBPaper00034636:heat_shock_downregulated
paired t-tests
Genes Showing Significant Expression Changes (P <= 0.05 After FDR) in Heat-Shocked (30 centigrade for 1.5 h; Two Arrays), Compared to Sham Controls (26 centigrade for 2.5 h; Five Arrays).
- WBPaper00034636:heat_shock_upregulated
paired t-tests
Genes Showing Significant Expression Changes (P <= 0.05 After FDR) in Heat-Shocked (30 centigrade for 1.5 h; Two Arrays), Compared to Sham Controls (26 centigrade for 2.5 h; Five Arrays).
- WBPaper00040116:pRJ-FR.5_down_regulated
To identify differentially regulated genes, authors eliminated all probes with absent or marginal flags and then performed a t-test with the significance level set at p < 0.05.
Genes down regulated after fed by 25 mg/ml pRJ-Fr.5 for 24 h beginning at the L4 stage.
- WBPaper00040116:pRJ-FR.5_up_regulated
To identify differentially regulated genes, authors eliminated all probes with absent or marginal flags and then performed a t-test with the significance level set at p < 0.05.
Genes up regulated after fed by 25 mg/ml pRJ-Fr.5 for 24 h beginning at the L4 stage.
- WBPaper00053140:SustainedResponse_20nmAgCit
Differentially expressed genes were selected using one-way analysis of variance (ANOVA) based on Welch t-test. To improve moderated t-statistics, the I/NI-calls gene filtering procedure was applied before the Welch t-test to exclude non-informative genes. For each comparison between two experimental groups, the fold change (FC) of every annotated gene, together with their corresponding p-value, was used for selection of differentially expressed genes with cutoffs of p < 0.05 and FC > 1.5.
Transcripts that showed sustained response after C. elegans adults were exposed to 100 ug per mL 20nmAgCit in CeHM for 4, 8 or 24 h.
- WBPaper00036464:S.aureus-RN6390_regulated
The two conditions were then compared in Resolver to determine fold change for each probe set and a p-value, using a modified t test. Genes with a 2-fold or greater fold change and a p-value ,0.01 were considered differentially expressed.
Genes with altered expression after 8 h S. aureus infection.
- WBPaper00053140:DecreasingResponse_20nmAgCit
Differentially expressed genes were selected using one-way analysis of variance (ANOVA) based on Welch t-test. To improve moderated t-statistics, the I/NI-calls gene filtering procedure was applied before the Welch t-test to exclude non-informative genes. For each comparison between two experimental groups, the fold change (FC) of every annotated gene, together with their corresponding p-value, was used for selection of differentially expressed genes with cutoffs of p < 0.05 and FC > 1.5.
Transcripts that showed early or decreasing response after C. elegans adults were exposed to 100 ug per mL 20nmAgCit in CeHM for 4, 8 or 24 h.
- WBPaper00053140:IncreasingResponse_20nmAgCit
Differentially expressed genes were selected using one-way analysis of variance (ANOVA) based on Welch t-test. To improve moderated t-statistics, the I/NI-calls gene filtering procedure was applied before the Welch t-test to exclude non-informative genes. For each comparison between two experimental groups, the fold change (FC) of every annotated gene, together with their corresponding p-value, was used for selection of differentially expressed genes with cutoffs of p < 0.05 and FC > 1.5.
Transcripts that showed late or increasing response after C. elegans adults were exposed to 100 ug per mL 20nmAgCit in CeHM for 4, 8 or 24 h.