WBPaper00032003:ced-1(e1735)_upregulated

The microarray data were subjected to the Robust Multichip Averaging (RMA) Algorithm by using Partek Software (Partek, Inc., St. Charles, Missouri). GeneSpringSoftware9.0(AgilentTechnologies) was used to perform hierarchial cluster analysis. Genes that showed increased expression in ced-1(e1735) comparing with in N2.

WBPaper00034636:heat_shock_downregulated

paired t-tests Genes Showing Significant Expression Changes (P <= 0.05 After FDR) in Heat-Shocked (30 centigrade for 1.5 h; Two Arrays), Compared to Sham Controls (26 centigrade for 2.5 h; Five Arrays).

WBPaper00034636:heat_shock_upregulated

paired t-tests Genes Showing Significant Expression Changes (P <= 0.05 After FDR) in Heat-Shocked (30 centigrade for 1.5 h; Two Arrays), Compared to Sham Controls (26 centigrade for 2.5 h; Five Arrays).

WBPaper00006465:IV_ethanol_late_repression

Class IV genes are down-regulated at 6 h, but not at earlier time points.

WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected

Adjusted p-value (Padj) <= 0.01 was considered significant for differential gene expression. Transcripts that showed significantly increased expression in nhr-42(tm1375) animals infected with S. aureus SH1000 for 5 h, comparing to in N2 animals infected with S. aureus SH1000 for 5 h.

WBPaper00065225:nhr-42(tm1375)_downregulated_S.aureus-infected

Adjusted p-value (Padj) <= 0.01 was considered significant for differential gene expression. Transcripts that showed significantly decreased expression in nhr-42(tm1375) animals infected with S. aureus SH1000 for 5 h, comparing to in N2 animals infected with S. aureus SH1000 for 5 h.

WBPaper00006465:II_ethanol_late_induction

Class II genes are those showing increase in transcript abundance at 6 h, but not at early time points.

WBPaper00047021:MWCNT_downregulated

N.A. Genes that showed significantly decreased expression after exposed to multiwall carbon nanotubes (MWCNTs) for 4 and 24 h.

WBPaper00047021:MWCNT_upregulated

N.A. Genes that showed significantly increased expression after exposed to multiwall carbon nanotubes (MWCNTs) for 4 and 24 h.

WBPaper00006465:I_ethanol_rapid_induction

Class I consists of genes whose transcription levels increased rapidly at a very early stage and were maintained at high levels up to 6 h exposure.