- WBPaper00038168:lin-35_downregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were downregulated in lin-35.
- WBPaper00038168:lin-35_upregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were upregulated in lin-35.
- WBPaper00062684:pathogen_downregulated_N2
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in N2 animals that showed significantly decreased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_upregulated_CB4856
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in CB4856 animals that showed significantly increased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_upregulated_N2
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in N2 animals that showed significantly increased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_downregulated_CB4856
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in CB4856 animals that showed significantly decreased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00038168:lin-15B(n744)_downregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were downregulated in lin-15B(n744).
- WBPaper00038168:lin-15B(n744)_upregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were upregulated in lin-15B(n744).