- WBPaper00041506:P3_enriched
t-test with p-value < 0.05 (FDR corrected)
Transcripts enriched in emrbyonic P3 cell comparing to in C, according to single cell RNAseq.
- WBPaper00041506:C_enriched
t-test with p-value < 0.05 (FDR corrected)
Transcripts enriched in emrbyonic C cell comparing to in P3, according to single cell RNAseq.
- WBPaper00053140:SustainedResponse_20nmAgCit
Differentially expressed genes were selected using one-way analysis of variance (ANOVA) based on Welch t-test. To improve moderated t-statistics, the I/NI-calls gene filtering procedure was applied before the Welch t-test to exclude non-informative genes. For each comparison between two experimental groups, the fold change (FC) of every annotated gene, together with their corresponding p-value, was used for selection of differentially expressed genes with cutoffs of p < 0.05 and FC > 1.5.
Transcripts that showed sustained response after C. elegans adults were exposed to 100 ug per mL 20nmAgCit in CeHM for 4, 8 or 24 h.
- WBPaper00040990:PA14_downregulated
Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%).
Genes with expression level repressed by bacteria strain PA14.
- WBPaper00040990:PA14_upregulated
Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%).
Genes with expression level induced by bacteria strain PA14.