- WBPaper00031850:mdt-15(RNAi)_upregulated
Author used empirical Bayes fitting in limma with multiple hypothesis correction method BH, and considered genes with a P-value < 0.05 to be differentially expressed.
Genes upregulated in mdt-15(RNAi) animals comparing with control.
- WBPaper00031850:mdt-15(RNAi)_downregulated
Author used empirical Bayes fitting in limma with multiple hypothesis correction method BH, and considered genes with a P-value < 0.05 to be differentially expressed.
Genes downregulated in mdt-15(RNAi) animals comparing with control.
- WBPaper00041960:N2_fasting_upregulated_anytime
Hierarchical clustering analysis was done with squared Euclidean as the distance metric and average linkage as the cluster method by using GeneSpring GX.
Genes upregulated by fasting anytime during the 48 hour time course in N2 worms.
- WBPaper00044578:4-day_reduced-humidity_downregulated_proteomics
The Benjamini-Hochberg FDR method was applied and an adjusted p-value cutoff level of 0.05 was used for significance.
Proteins that were down-regulated after four day exposure to reduced humidity (98% relative humidity) according to microarray analysis.
- WBPaper00041960:N2_fasting_upregulated_9hto12h
Hierarchical clustering analysis was done with squared Euclidean as the distance metric and average linkage as the cluster method by using GeneSpring GX.
Genes upregulated by fasting anytime between 9 hour to 12 hour time course in N2 worms.
- WBPaper00031132:LiCl_downregulated
Authors used two-sample t-tests for each gene and then used a FWER cut-off of 5% on the marginal p values using the Holms step-down method.
Gene transcript changes (down-regulated) in response to 10mM LiCl.
- WBPaper00044578:4-day_reduced-humidity_upregulated_proteomics
The Benjamini-Hochberg FDR method was applied and an adjusted p-value cutoff level of 0.05 was used for significance.
Proteins that were up-regulated after four day exposure to reduced humidity (98% relative humidity) according to microarray analysis.
- WBPaper00050015:ifg-1(RNAi)_downregulated
Benjamini and Hochbergs method of false detection rate was used to etermine adjusted q-values (< 0.05) based on four biological replicates.
Transcripts that showed significantly decreased expression in ifg-1(RNAi) animals comparing to in control RNAi animals
- WBPaper00050015:ifg-1(RNAi)_upregulated
Benjamini and Hochbergs method of false detection rate was used to etermine adjusted q-values (< 0.05) based on four biological replicates.
Transcripts that showed significantly increased expression in ifg-1(RNAi) animals comparing to in control RNAi animals