WBPaper00053771:down_by_skn-1(RNAi)

Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1. Transcripts that showed significantly decreased expression in skn-1(RNAi) animals comparing to vector controls.

WBPaper00053771:up_at_dpy-7(e88)

Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1. Transcripts that showed significantly increased expression in dpy-7(e88) animals comparing to N2 animals.

WBPaper00053771:up_at_3h-NaCl

Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1. Transcripts that showed significantly increased expression in animals after 3 hours of exposure to 300mM NaCl comparing to control animals.

WBPaper00053771:up_at_24h-NaCl

Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1. Transcripts that showed significantly increased expression in animals after 24 hours of exposure to 300mM NaCl comparing to control animals.

WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)

Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1. Transcripts that showed significantly decreased expression in skn-1(RNAi);dpy-7(e88) animals comparing to dpy-7(e88) vector controls.

WBPaper00044501:gld-1_let-7_regulated

N.A. Proteins that showed differential expression in (B) let-7(mg279);[let-7 sponge] when comparing to (A) [let-7 sponge], and in (C) gld-1(op236); let-7(mg279);[let-7 sponge] when comparing to (A) [let-7 sponge]

WBPaper00053771:down_by_skn-1(RNAi)_at_3h-NaCl

Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1. Transcripts that showed significantly decreased expression in skn-1(RNAi) animals comparing to vector controls, after both were exposed to 300mM NaCl for 3 hours.

WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl

Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1. Transcripts that showed significantly decreased expression in skn-1(RNAi) animals comparing to vector controls, after both were exposed to 300mM NaCl for 24 hours.

[cgc6390]:Cluster_B

hierarchical clustering Germline-enriched and sex-biased expression profile cluster B.

WBPaper00040209:B.thuringiensis_downregulated_MY18

Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR). Transcripts that showed significantly decreased expression after 8 hour of exposure of C.elegans strain MY18 to pathogenic B. thuringiensis B-18247.