WBPaper00006465:I_ethanol_rapid_induction

Class I consists of genes whose transcription levels increased rapidly at a very early stage and were maintained at high levels up to 6 h exposure.

WBPaper00034636:heat_shock_downregulated

paired t-tests Genes Showing Significant Expression Changes (P <= 0.05 After FDR) in Heat-Shocked (30 centigrade for 1.5 h; Two Arrays), Compared to Sham Controls (26 centigrade for 2.5 h; Five Arrays).

WBPaper00034636:heat_shock_upregulated

paired t-tests Genes Showing Significant Expression Changes (P <= 0.05 After FDR) in Heat-Shocked (30 centigrade for 1.5 h; Two Arrays), Compared to Sham Controls (26 centigrade for 2.5 h; Five Arrays).

WBPaper00049594:osm-9(ok1677)_NaCl(200mM)_upregulate

Differentially expressed genes were determined using read counts per gene and a P-value threshold of < 0.05 with edgeR version 3.2.4. Putative proteostasis genes differentially upregulated in osm-9(ok1677) worms following a 6 h exposure to 200 mM NaCl.

WBPaper00036464:S.aureus-RN6390_regulated

The two conditions were then compared in Resolver to determine fold change for each probe set and a p-value, using a modified t test. Genes with a 2-fold or greater fold change and a p-value ,0.01 were considered differentially expressed. Genes with altered expression after 8 h S. aureus infection.

WBPaper00006465:IV_ethanol_late_repression

Class IV genes are down-regulated at 6 h, but not at earlier time points.

WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected

Adjusted p-value (Padj) <= 0.01 was considered significant for differential gene expression. Transcripts that showed significantly increased expression in nhr-42(tm1375) animals infected with S. aureus SH1000 for 5 h, comparing to in N2 animals infected with S. aureus SH1000 for 5 h.

WBPaper00065225:nhr-42(tm1375)_downregulated_S.aureus-infected

Adjusted p-value (Padj) <= 0.01 was considered significant for differential gene expression. Transcripts that showed significantly decreased expression in nhr-42(tm1375) animals infected with S. aureus SH1000 for 5 h, comparing to in N2 animals infected with S. aureus SH1000 for 5 h.

WBPaper00006465:II_ethanol_late_induction

Class II genes are those showing increase in transcript abundance at 6 h, but not at early time points.

WBPaper00047021:MWCNT_downregulated

N.A. Genes that showed significantly decreased expression after exposed to multiwall carbon nanotubes (MWCNTs) for 4 and 24 h.