- WBPmat00005485
Frequency-matrix version of N1-box, pan-neuronal motif of Ruvinsky et al. (2007).
- WBPmat00000063
Class I PUF-11-binding RNA site. The AU dinucleotide was located in position +6 and +7. An adenosine was highly preferred in position +5.
- WBPmat00000066
Class I PUF-11-binding RNA site. The AU dinucleotide was located in position +6 and +7. An adenosine was highly preferred in position +5.
- WBPmat00000065
Class III PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. An adenosine was highly preferred in position +5, as in Class I.
- WBPmat00000068
Class III PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. An adenosine was highly preferred in position +5, as in Class I.
- WBPmat00000067
Class II PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. The indentities of bases between the UGU and AU elements were more degenerate that in Classes I and III. Class II RNAs were enriched for C at the -1 position.
- WBPmat00000064
Class II PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. The indentities of bases between the UGU and AU elements were more degenerate that in Classes I and III. Class II RNAs were enriched for C at the -1 position.