The related dense body and M-line structures that are found in C. elegans body wall muscle cells are integrin-based transmembrane attachments that couple the basal lamina to the muscle cell cytoskeleton. In an effort to genetically dissect the assembly of dense body and M-lines, we have been studying mutants with the Pat (Paralyzed, Arrested elongation at Two-fold) phenotype. To date all of the molecularly isolated genes associated with the Pat phenotype are known to encode dense body components, includingunc-52 (UNC-52/perlecan) (1),
pat-2 (integrin alpha subunit) (Williams and Waterston, unpubl.),
pat-3 (integrin beta subunit) (2),
unc-112 (UNC-112) (3),
deb-1 (DEB-1/vinculin) (4),
unc-97 (UNC-97/PINCH) (5),
pat-4 (PAT-4/integrinl-linked kinase) (6), and
pat-6 (PAT-6/actopaxin) (Lin and Williams, unpubl.). These mutants, analyzed with antibodies to specific attachment proteins and/or functional Green Fluorescent Protein fusions, have produced an assembly dependence pathway for dense bodies and M-lines (6, 7). Here we focus on the
pat-9 gene, which has not yet been molecularly cloned.
pat-9 mutants have defects in body wall muscle assembly that most closely resemble those found in
deb-1vinculin mutants. In particular, the recruitment of actin thin filaments to the muscle cell membrane appears to be completely disrupted, while deficits in the recruitment of myosin thick filaments are less severe. We predict that
pat-9 encodes a dense body protein. To positionally clone
pat-9, we are currently refining its location on the genetic map. Previously we mapped
pat-9 to the interval defined by the right end points of deficiencies mnDf8 and mnDf1 on the right end of the X linkage group. We are now using single nucleotide polymorphisms between N2 and the wild-type Hawaiian C. elegans strain CB4856 to further refine the
pat-9 map location. We are currently selecting Unc recombinants from
unc-3 pat-9/ + + heterozygotes, and then assaying them for several different SNPs that span the right end of X.