We are building a genetic toolkit for the C. elegans genome, consisting of regional chromosomal balancers and sets of overlapping balanced deficiencies whose endpoints will be tied to the physical map. In recent work we have concentrated on making new balancers for the left arm of LG II, in the interval to the left of
dpy-10. New balancers including mC4, mC5, mC6, and mT1 (previously called mC7) were isolated and partially characterized. All suppress recombination in the interval between
rol-1 and
unc-85, and all are marked with
dpy-10(
e128). mT1 has been shown to be a II;III translocation, causing pseudolinkage of markers from the right arms of both chromosomes (
rol-1 II and
unc-71 III). Its left breakpoint on LG II apparently lies very near
dpy-10, and it thus does not balance well in our region of interest. However, it is a potential alternative to the balancers in common use, mnC1(II) or eT1(III;V). mC5 and mC6 both balance well, reducing recombination between
rol-1 and
unc-85 from about 8.5 map units to about 0.2 map units. Of the two, mC6 is much more stable. It balances extremely well from
rol-1 (the rightmost marker tested so far) left to
let-552, although suppression of recombination falls off sharply between
let-552 and
sqt-2. We are now using mC6 to isolate and map deficiencies. Approximately 3000 chromosomes mutagenized with 0.07% formaldehyde were screened, resulting in three balanced lethals. We recently switched to UV mutagenesis. Once we have a number of balanced deficiencies in hand, we plan to locate their endpoints, designing PCR primers from DNA sequence generated by the C. elegans genome project. This work is funded by the NIH National Center for Research Resources (NCRR).