-
[
Trends Genet,
1999]
The genome sequence of the free-living nematode Caenorhabiditis elegans is nearly complete, with resolution of the final difficult regions expected over the next few months. This will represent the first genome of a multicellular organism to be sequenced to completion. The genome is approximately 97 Mb in total, and encodes more than 19 099 proteins, considerably more than expected before sequencing began. The sequencing project - a collaboration between the Genome Sequencing Center in St Louis and the Sanger Centre in Hinxton - has lasted eight years, with the majority of the sequence generated in the past four years. Analysis of the genome sequence is just beginning and represents an effort that will undoubtedly last more than another decade. However, some interesting findings are already apparent, indicating that the scope of the project, the approach taken, and the usefulness of having the genetic blueprint for this small organism have been well worth the effort.
-
[
Ecol Dis,
1983]
Medical records concerning filarial diseases in Ceylon date from the account of Davy[1], though there are hints as to the more obvious manifestations in the old chronicles of the country, too. A first survey was conducted in 1912/1913 concentrating on urban areas, followed by a second survey in the 1930s with emphasis on the rural parts. The results displayed a remarkable distribution pattern: Wuchereria bancrofti, the so-called "urban type", concentrated in Galle and Matara towns, whereas Brugia malayi, the "rural type", widespread along the southwest coast from Matara to Negombo, plus isolated pockets in the northwest, central north, east and south. The survey of the 1930s lead to the supposition that the occurrence of B. malayi must have something to do with the distribution of certain water plants, a suspicion later on confirmed in that Pistia stratiotes in particular--but other water plants as well--are essential for the survival of the vector (Taeniorhynchus (Mansonia) uniformis) during its early (submersed) stages of development. A determined effort to remove the water plants from tanks etc. reduced the rural type with encouraging results. At the same time, a combination of factors, in particular the war-time sojourn of masses of troops from Africa, already infected by filarial diseases, in the southwestern coastal areas triggered off an unexpected spread of the urban type out of its early "bridge-heads" in Galle and Matara towns to invade the southwest coastal areas, and, later on, supported by increased population mobility, to advance further inland too. At present, there is no remedy within sight to give some hope to come to grips with this problem as the vector, Culex pipiens fatigans, is ubiquitous and finds suitable breeding grounds practically everywhere. Research into the history of filarial diseases in Ceylon points as far as B. malayi is concerned, to an invasion by a Malayan army under the Kalinga kings during the days of close relations between Ceylon and southeast Asia, i.e. during the 12th and 13th centuries, and as far as W. bancrofti is concerned, a Chinese army, invading the southern coast in the early 15th century, is made responsible. Filarial diseases in Ceylon present a particular interesting case of geomedical research; but inspite of encouraging results in fighting the rural type, i.e. B. malayi, the urban type, W. bancrofti, seems to remain a problem of public health in the island for the forseeable future.
-
[
Int J Dev Biol,
2000]
1969 was a landmark year. But for me it was not Neil Armstrong's giant leap or Woodstock heralding the beginning of the end of the sixties that sticks in my mind. It was a visit I made to Cambridge to meet a "bloke who is starting a new project to study some sort of worm", as my head of department at the Medical Research Council's National Institute of Medical Research informed me...
-
[
Stud Hist Philos Biol Biomed Sci,
2012]
This paper argues that the history of the computer, of the practice of computation and of the notions of 'data' and 'programme' are essential for a critical account of the emergence and implications of data-driven research. In order to show this, I focus on the transition that the investigations on the worm C. elegans experienced in the Laboratory of Molecular Biology of Cambridge (UK). Throughout the 1980s, this research programme evolved from a study of the genetic basis of the worm's development and behaviour to a DNA mapping and sequencing initiative. By examining the changing computing technologies which were used at the Laboratory, I demonstrate that by the time of this transition researchers shifted from modelling the worm's genetic programme on a mainframe apparatus to writing minicomputer programs aimed at providing map and sequence data which was then circulated to other groups working on the genetics of C. elegans. The shift in the worm research should thus not be simply explained in the application of computers which transformed the project from hypothesis-driven to a data-intensive endeavour. The key factor was rather a historically specific technology-in-house and easy programmable minicomputers-which redefined the way of achieving the project's long-standing goal, leading the genetic programme to co-evolve with the practices of data production and distribution.
-
[
J Proteomics,
2010]
Much of our knowledge on heredity, development, physiology and the underlying cellular and molecular processes is derived from the studies of model, or reference, organisms. Despite the great variety of life, a common base of shared principles could be extracted by studying a few life forms, selected based on their amenability to experimental studies. Very briefly, the origins of a few model organisms are described, including E. coli, yeast, C. elegans, Drosophila, Xenopus, zebrafish, mouse, maize and Arabidopsis. These model organisms were chosen because of their importance and wide use, which made them systems of choice for genome-wide studies. Many of their genomes were between the first to be fully sequenced, opening unprecedented opportunities for large-scale transcriptomics and proteomics studies.
-
[
Genetics,
2015]
A little over 50 years ago, Sydney Brenner had the foresight to develop the nematode (round worm) Caenorhabditis elegans as a genetic model for understanding questions of developmental biology and neurobiology. Over time, research on C. elegans has expanded to explore a wealth of diverse areas in modern biology including studies of the basic functions and interactions of eukaryotic cells, host-parasite interactions, and evolution. C. elegans has also become an important organism in which to study processes that go awry in human diseases. This primer introduces the organism and the many features that make it an outstanding experimental system, including its small size, rapid life cycle, transparency, and well-annotated genome. We survey the basic anatomical features, common technical approaches, and important discoveries in C. elegans research. Key to studying C. elegans has been the ability to address biological problems genetically, using both forward and reverse genetics, both at the level of the entire organism and at the level of the single, identified cell. These possibilities make C. elegans useful not only in research laboratories, but also in the classroom where it can be used to excite students who actually can see what is happening inside live cells and tissues.
-
[
Trends Parasitol,
2001]
The absence of animal models in which to reproduce successfully the complete life cycle of Onchocerca volvulus has hindered progress towards unravelling the processes involved in the regulation of parasite abundance in the vertebrate host. Mathematical frameworks have been developed to explore the consequences of such processes in determining parasite population dynamics and the effect on these of control interventions. Post-control predictions are strongly influenced by the assumptions concerning the reproductive life span of the adult female worm (the longest-lived parasite stage) and the distribution of its survival times, and this notion is important to all frameworks. Here, we review the development of models concerning onchocerciasis and discuss the various approaches that have been used, presenting a deterministic framework with parameter values estimated from the Mexican onchocerciasis control programme. This model is used to evaluate interventions combining the removal of adult worms (nodulectomy) and the microfilaricidal and possibly sterilizing effect of ivermectin.
-
[
Carbohydr Res,
2016]
This review discusses the advances in metabolic oligosaccharide engineering (MOE) from 2010 to 2016 with a focus on the structure, preparation, and reactivity of its chemical probes. A brief historical overview of MOE is followed by a comprehensive overview of the chemical probes currently available in the MOE molecular toolbox and the bioconjugation techniques they enable. The final part of the review focusses on the synthesis of a selection of probes and finishes with an outlook on recent and potential upcoming advances in the field of MOE.
-
[
Development,
2024]
Male pheromones accelerate the development of hermaphrodite larvae in Caenorhabditis elegans, but the importance of this phenomenon is not well understood. A new paper in Development shows that pheromone exposure during larval stage 3 helps coordinate behaviour and development by modulating the timing of the transition to larval stage 4. To learn more about the story behind the paper, we caught up with first author Denis Faerberg who carried out the work in the lab of the corresponding author Ilya Ruvinsky at Northwestern University, USA.
-
[
Sci Aging Knowledge Environ,
2002]
This article reviews key events in the genetic analysis of aging in the worm. The events are presented in the form of a timeline and include landmark papers, key meetings, and the development of important funding agencies. I also speculate on events that might appear in this timeline if this review were written in the distant future.