The CRISPR/Cas9 system of genetic manipulation is widely used in many systems. We recently demonstrated the use of CRISPR/Cas9 to introduce targeted mutations in the human-parasitic nematode Strongyloides stercoralis and the closely related rat-parasitic nematode Strongyloides ratti. Using the
unc-22 gene as a proof-of-concept, we created both F1 homozygous knockouts and F3 mutants via host passage in S. stercoralis. However, the rate of mutagenesis was much lower for S. ratti than for S. stercoralis. Our current project is to optimize CRISPR/Cas9 mutagenesis in S. ratti. The specific goals include increasing the survival of F1 progeny, improving the selection process for potential integrants, designing a generic site for targeted integration of transgenes, and creating a usable system to establish targeted stable mutant lines in Strongyloides ratti. To improve selection and increase the number of integrants in the F1 generation, we varied parameters such as the components and the ratios of these components in microinjection mixes and the use of different fluorescent markers. We identified optimized conditions that increase the overall rate of transgenesis in S. ratti. For the generic targeting platform, we chose to disrupt the Strongyloides
nas-4 gene. We have designed homology-directed repair constructs for the insertion into the
Ss-nas-4 site of genes encoding fluorescent markers, calcium indicators, and genetic silencers under the control of neuron-specific promoters. Transgenes incorporated into the genome of Strongyloides species are expressed in successive generations, allowing for functional experimentation at all life stages. With this work, we hope to develop a versatile CRISPR/Cas9 toolkit for Strongyloides species that will enable functional studies of genes and neurons required for parasitic behaviors.