Unwinding The Mysteries Of RNA Interference: A Conserved RNA Helicase With Double-Stranded RNA Binding Domains Is Required For RNAi In C. elegans Nathaniel R. Dudley and Bob Goldstein Department of Biology, University of North Carolina, Chapel Hill, NC 27599-3280 RNA-mediated interference (RNAi) is a phenomenon in which dsRNA triggers the sequence specific degradation of cognate mRNAs. Since its discovery (1), RNAi has quickly become a widely used tool to study gene function in a number of model organisms. However, its exact molecular nature remains incompletely defined. We have previously reported the development of a method that uses RNAi itself to identify new components of the RNAi machinery (RNAi to RNAi) (2). We have used this method to test candidate genes for roles in RNAi. Candidates were selected based on sequence, including predicted RNAses, helicases, DNA/RNA binding proteins, exosome components, RdRPs and chromatin modifiers. Of our initial 57 candidates, we have found 25 possible RNAi components, which we are testing further by determining whether loss of function mutants are also RNAi-deficient. We report here the identification of one such gene,
rha-1 (T07D4.3), a new gene required for RNAi. We have found that
rha-1 is required for RNAi to function in the germline: a recessive deletion mutant (
tm329), predicted by sequence to be a null allele, fails in RNAi of germline-expressed genes. Additionally, we have found that germline expressed transgenes are desilenced in the
rha-1 mutant. C. elegans RHA-1 contains a conserved helicase domain and two dsRNA binding domains and is homologous to Drosophila maleless and to RNA Helicase A in humans. Interestingly, these proteins have functions in the nucleus. We have created a rescuing GFP construct, which shows both nuclear and cytoplasmic localization.
rha-1(
tm329) has developmental phenotypes as well, including a temperature-sensitive Him phenotype and also has a significantly lower brood-size. Additionally, males mate poorly at 25C and have pronounced gonadal defects. Injection of siRNAs could not bypass the requirement for RHA-1, suggesting that RHA-1 acts downstream of siRNA production. We will present evidence that RHA-1 is required for RNAi and report further characterizations on the role of RHA-1 in the RNAi pathway. 1. Fire A, et al. (1998) Nature. 391(6669):806-11. 2. Dudley NR, Labbe JC, Goldstein B Proc Natl Acad Sci U S A. (2002) 99(7):4191-6.