Wylie T et al. (2004) Nucleic Acids Res "Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes."

Dante M, Clifton SW, Mitreva MD, McCarter JP, Wilson RK, Wylie T, Martin JC, Waterston RH, Chinwalla A

[Nucleic Acids Res, 2004]

Nematode.net (www.nematode.net) is a web- accessible resource for investigating gene sequences from nematode genomes. The database is an outgrowth of the parasitic nematode EST project at Washington University's Genome Sequencing Center (GSC), St Louis. A sister project at the University of Edinburgh and the Sanger Institute is also underway. More than 295,000 ESTs have been generated from >30 nematodes other than Caenorhabditis elegans including key parasites of humans, animals and plants. Nematode.net currently provides NemaGene EST cluster consensus sequence, enhanced online BLAST search tools, functional classifications of cluster sequences and comprehensive information concerning the ongoing generation of nematode genome data. The long-term goal of nematode.net is to provide the scientific community with the highest quality sequence information and tools for studying these diverse species.

Liu J et al. (1996) Science "Interaction between a putative mechanosensory membrane channel and a collagen."

Schrank B, Waterston RH, Liu J

[Science, 1996]

The degenerin family of proteins in Caenorhabditis elegans is homologous to subunits of the mammalian amiloride-sensitive epithelial sodium channels. Mutations in nematode degenerins cause cell death, probably because of defects in channel function. Genetic evidence was obtained that the unc-105 gene product represents a degenerin homolog affecting C. elegans muscles and that this putative channel interacts with type IV collagen in the extracellular matrix underlying the muscle cell. This interaction may serve as a mechanism of stretch-activated muscle contraction, and this system could provide a molecular model for the activation of mechanosensitive ion channels.AD - Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA.FAU - Liu, JAU - Liu JFAU - Schrank, BAU - Schrank BFAU - Waterston, R HAU - Waterston RHLA - engSI - GENBANK/J04694SI - GENBANK/M23704SI - GENBANK/M67507SI - GENBANK/U07224SI - GENBANK/U07888SI - GENBANK/U22327SI - GENBANK/X56979SI - GENBANK/X76730SI - GENBANK/Y00706ID - GM23883/GM/NIGMSPT - Journal ArticleCY - UNITED STATESTA - ScienceJID - 0404511RN - 0 (Helminth Proteins)RN - 0 (Sodium Channels)RN - 0 (Unc-105 protein)RN - 9007-34-5 (Collagen)SB - IMSB - S