[
Methods Cell Biol,
1995]
The clone-based physical map of the 100-Mb Caenorhabditis elegans genome has evolved over a number of years. Although the detection of clone overlaps and construction of the map have of necessity been carried out centrally, it has been essentially a community project. Without the provision of cloned markers and relevant map information by the C. elegans community as a whole, the map would lack the genetic anchor points and coherent structure that make it a viable entity. Currently, the map consists of 13 mapped contigs totaling in excess of 95 Mb and 2 significant unmapped contigs totaling 1.3 Mb. Telomeric clones are not yet in place. The map carries 600 physically mapped loci, of which 262 have genetic map data. With one exception, the physical extents of the remaining gaps are not known. The exception is the remaining gap on linkage group (LG) II. This has been shown to be bridged by a 225-kb Sse83871 fragment. Because the clones constituting the map are a central resource, there is essentially no necessity for individuals to construct cosmid and yeast artificial chromosome (YAC) libraries. Consequently, such protocols are not included here. Similarly, protocols for clone fingerprinting, which forms the basis of the determination of cosmid overlaps and the mapping of clones received from outside sources and has to be a centralized operation, and YAC linkage are not give here. What follows is essentially a "user's guide" to the physical map. Details of map construction are given where required for interpretation of the map as distributed. The physical mapping has been a collaboration between the MRC Laboratory of Molecular Biology, Cambridge, United Kingdom (now at The Sanger Centre, Cambridge, UK) and Washington University School of Medicine, St. Louis, Missouri. Inquiries regarding map interpretation, information, and materials should be addressed to alan@sanger.ac.uk or rw@nematode.wustl.edu.
[
2000]
Computer tracking of Caenorhabditis elegans, a free-living soil nematode, is a promising tool to assess behavioral changes upon exposure to contaminants. A short life cycle, a known genetic make-up, thoroughly studied behavior, and a completely mapped nervous system make C. elegans an attractive soil test organism with many advantages over the commonly used earthworm. Although many toxicity tests have been performed with C. elegans, the majority focused on mortality, a much less sensitive endpoint than behavior. A computer tracking system has been developed to monitor behavioral changes using C. elegans. Because conditions unrelated to specific toxicant exposures, such as changes in temperature, developmental stage, and presence of adequate food sources, can affect behavior, there is a need to standardize tracking procedures. To this end, we have developed reference charts for control movement comparing the movement of four and five day-old adult nematodes. The use of K-medium versus deionized (DI) H2O for pre-tracking rinses was also investigated. A final reference chart compared the behavioral responses of nematodes at various food densities (i.e. bacterial concentrations).