Elaborate studies on the biogeography and the evolutionary alterations of developmental processes are of paramount importance, to understand the evolution of developmental processes at the microevolutionary level. To acuminate this, we use Pristionchus pacificus as a model system. The genus Pristionchus has a worldwide distribution and different strains of Pristionchus pacificus exist from Washington (PS 1843), Hawaii (JU 138), Ontario (AF 8130), Poland (RS 106) and the wild type strain from California (PS 312). Previous AFLP studies revealed a high degree of polymorphisms between the strains of Washington, Hawaii and California (Srinivasan etal., 2001). BAC end sequencing and SSCP analysis of BAC end fragments between the strains of California and Washington confirmed these original observations. To obtain a better picture of the distribution of polymorphisms between the strains of P. pacificus, we chose a random 5 Kb region on Chromosome III that contains no open reading frames. We observed a high degree of polymorphism (3.46%) in both Washington and Hawaii when compared to the laboratory strain California. To extend this study to regions containing a gene, we worked on two genes, namely
ceh-20 and
ceh-40. In C. elegans
ceh-20 and
ceh-40, orthologues of Drosophila Extradenticle are on Chromosomes III and I, respectively. Interestingly, in P. pacificus both these genes are on Chromosome III and on the same BAC . PCR analysis indicated that
ceh-40 is 600 bp upstream of
ceh-20. Both the genes are SL1 spliced and do not seem to be within one operon. Sequencing the two genes from the laboratory strains of P. pacificus indicated an approximate ~3% polymorphism, predominantly in the non-coding regions, a diversity pattern similar to the recent findings in Drosophila melanogaster and Human. In contrast, the most divergent strains of C. elegans, Bristol (N2) and Hawaii (CB 4856) show 1 SNP in 873 bp (Wicks etal., 2001). To obtain a better understanding of the polymorphism level in other species of Pristionchus, namely P. maupasi and P. lheritieri, we cloned these two genes by degenerate PCR. Comparison of sequences of the 2 genes in the different closely related species would give a better insight into the degree of polymorphisms in this genus. 1. Srinivasan, J., Pires-da silva, A., Gutierrez, A., Zheng, M., Jungblut, B., Witte, H., Schlak, I and Sommer, R.J (2001) Evol. Dev 3(4), 229-240. 2. Wicks, S.R., Yeh, R.T., Gish, W.R., Waterston, R.H and Plasterk, R.H.A (2001) Nature genetics., 28 : 160-164.