Cathy V Gunther et al. (2001) International C. elegans Meeting "DOES DAF-4 ALTERNATIVE POLYADENYLATION GENERATE A RECEPTOR ANTAGONIST?"

Cathy V Gunther, Donald L Riddle

[International C. elegans Meeting, 2001]

DAF-4 is the only type II TGF-beta/BMP receptor encoded in the C. elegans genome. daf-4 mutants are Daf, Sma and Mab, indicating a role for this receptor kinase in continuous (non-dauer) development, normal body size and male tail development. There are two daf-4 transcripts. During continuous growth, a 2.0 kb message is between 1.2 and 1.9-fold more abundant than the full-length 2.9 kb mRNA. In dauer larvae this ratio increases to 5-fold. However, when dauer larvae recover in fresh medium and resume growth, the relative abundance of 2.0 kb/2.9 kb mRNA declines to that of well-fed populations. This correlation suggests that alternative processing of daf-4 may be environmentally regulated. The 2.9 kb mRNA contains an SL1-spliced 11-exon open reading frame encoding the 744-amino acid DAF-4 receptor kinase. Using RT-PCR, we cloned and sequenced a cDNA of the 2.0 kb transcript, which includes an SL1 leader, all of exons 1-5, and intron 5 sequence upstream of an alternative poly(A) addition site. The open reading frame in the 2.0 kb cDNA encodes a putative 206-amino acid polypeptide that lacks transmembrane and kinase domains, but maintains 90% of the extracellular domain. To measure the effect of overexpressing the short daf-4 transcript on dauer formation, a daf-4 genomic fragment containing upstream sequence through intron 5, was subcloned and microinjected with the rol-6 marker into a weak daf-4 mutant. In three transgenic lines, constitutive dauer formation was enhanced in Rol progeny compared to non-Rol siblings. In one line at 22.5degC, 70% of the Rol progeny formed dauer larvae, whereas only 2% of the non-Rol siblings entered diapause. These results indicate that overexpression of the short daf-4 transgene increases dauer formation. We are currently testing whether this may be due to antagonism of DAF-4 signaling by the truncated receptor. For example, the secreted extracellular domain may bind ligand in competition with full-length receptor. Its abundance in the dauer stage may prevent dauer recovery in response to transient ligand expression.

Jennifer M Ross et al. (2002) Mid-west Worm Meeting "A role for the Polycomb Group in the development of the C. elegans male nervous system"

Jennifer M Ross, David A Zarkower

[Mid-west Worm Meeting, 2002]

Development of the C. elegans male-specific nervous system depends on interplay between two regulatory pathways, one involving the Hox genes mab-5 and egl-5, and the other involving the conserved sexual regulator mab-3. Males harboring Hox or mab-3 mutations lack V rays, sensory structures required for mating. The Hox proteins activate the bHLH gene lin-32 to specify the V rays, while the doublesex homolog MAB-3 synergizes with the Hox/lin-32 pathway to promote V ray differentiation. V rays can be restored in mab-3(-) males by overexpression of lin-32, suggesting that LIN-32 acts as a primary determinant of V ray fate, while MAB-3 potentiates LIN-32 activity.

Baird, Scott E. et al. (2011) International Worm Meeting "Ray Pattern Variation in C. elegans: Mapping a Major-Effect QTL on LGV."

Baird, Scott E., Bailey, Daniel

[International Worm Meeting, 2011]

Cryptic variation of ray pattern has been observed in recombinant-inbred lines (RIL) derived from crosses of N2 and CB4856 strains of C. elegans (Guess et al., 2007). The variant pattern consists of the anterior displacement of ray 3 into a position immediately adjacent to ray 2. QTL analyses of these RIL identified a major-effect QTL on the left arm of chromosome V (QTL-V). One RIL, QX34, possessed a recombinant chromosome V that contained CB4856 alleles from -12.72 to -7.93 cM, a region that precisely corresponded to QTL-V. When this chromosome (QX34-V) was crossed into an otherwise N2 background (strain PB2034), the variant ray pattern was observed at a frequency of 0.50. Based on genotypes of other RIL with recombination breakpoints in this region, it appeared that QTL-V resulted from allelic variation at two or more loci. To confirm this result, we are mapping the gene(s) in this region responsible for the observed variation in ray pattern. Initial experiments demonstrated that the CB4856 alleles responsible for QTL-V were recessive to the corresponding N2 alleles. From deletion heterozygotes, it was determined that at least one gene responsible for QTL-V lies to the right of -9.00 cM. However, deletion of a region from -12.06 to -8.15 did not uncover the ray pattern variant. Therefore, either allelic variation at two or more genes is required for QTL-V or the gene responsible for QTL-V resides between -8.15 and -7.93 cM. Attempts at recombination mapping of QTL-V are ongoing but have been hindered by an apparent suppression of recombination in PB2034/N2 heterozygotes.

Millard, J. et al. (2017) International Worm Meeting "Exploring the effects of the V-ATPase inhibitor luteolin on development, germline apoptosis, and FB-MO acidification in C. elegans."

Henderson, M., Millard, J., Dexter, K.

[International Worm Meeting, 2017]

The Vacuolar-type Adenosine Triphosphatase (V-ATPase) is a large multi-subunit enzyme complex found within intracellular and plasma membranes of animals, fungi, and plants. Contemporary research efforts have elucidated the role of V-ATPases in neoplastic maladies. Increased V-ATPase expression has been shown to support neoplastic metabolism and migration. The extensive involvement of V-ATPases in pathological conditions qualifies it as a suitable target for pharmaceutical intervention. Luteolin is a flavone found in a variety of plants, and is frequently consumed as a dietary supplement. Luteolin has been demonstrated to inhibit V-ATPase activity in mammalian cell culture. During spermatogenesis in C. elegans, the fibrous body-membranous organelles (FB-MOs) act as secretory vesicles responsible for the delivery of proteins to the surface of the sperm prior to fertilization. V-ATPases function to acidify the FB-MOs, contributing to their maturation to spermatozoa. Successful spermatogenesis is contingent on the fidelity of the V-ATPase in this acidification process. This change in pH can be detected by the use of LysoSensor Blue (Molecular Probes) staining. Disruption or inhibition of the V-ATPase complex is reliably reported by the LysoSensor staining assay. This allows for screening of potential V-ATPase inhibiting compounds such as luteolin. The toxicity of luteolin to C. elegans was demonstrated by growth and development assays. Examination of the effects of luteolin on germline apoptosis were performed using the ced-1::gfp reporter strain and acridine orange staining. Successful inhibition of FB-MO acidification supports the role of the V-ATPase in spermiogenesis as well as the potential therapeutic role of luteolin. These methods also provide an efficient medium for investigation of other V-ATPase inhibitory compounds.

Hediye Nese Cinar et al. (2007) International Worm Meeting "C. elegans: A model host for Vibrio cholerae and other Vibrio species."

Mahendra Kothary, Kivanc Bilecen, Robert Sprando, Ben D Tall, Fitnat Yildiz, Hediye Nese Cinar, Barbara McCardell

[International Worm Meeting, 2007]

Vibrio species are responsible for foodborne illnesses around the world, particularly in underdeveloped countries. Recent studies have shown that the human pathogens Vibrio cholerae (1) and Vibrio vulnificus (2) cause lethal infections in C. elegans. Using V. cholerae wild type strain A1552, we found that, in addition to the induction of the slow killing in adult worms, A1552 also killed larvae and caused escape behavior when killing assays were performed on brain heart infusion (BHI) agar plates. V. cholerae: OP50 mixed inoculation (1:10000) was as effective as the V. cholerae single inoculation in killing adults and larvae, indicating that the infectious dose of V. cholerae is very low. Furthermore, L4 stage worms which were exposed to a GFP-tagged V. cholerae strain for one hour and subsequently fed with OP50, exhibited gut colonization of V. cholerae which resulted in worm death similar to that observed in the continuous feeding experiments. To determine whether C. elegans prefers OP50 over V. choleare, 20 <font face=symbol>m</font>l of each bacterial culture were seeded on opposite sides of BHI plates and worms were placed at the midline. N2 adults were equally distributed to the OP50 and V. cholerae sides of the plate which suggests that they do not show a preference for OP50. However, worms on the OP50 side of the plate were located on the bacterial lawn while worms on the V. cholerae side tended to wander about and did not show a preference for the bacterial lawn. Once the OP50 lawn became contaminated with V. cholerae, which was carried through worms, all the worms on the plate adopted &#145;wandering about behavior. These observations suggest that C. elegans may sense V. cholerae as a harmful agent and possibly avoids it upon exposure. Alternatively, V. cholerae may have destroyed sensory processes in worms resulting in loss of their ability to locate the food. Other clinical isolates of V. cholerae are being tested in killing and avoidance assays. A V. cholerae transposon insertion library will also be screened to identify genes required for the observed phenotypes. These studies will be extended to other pathogenic Vibrio species. (1) Vaitkevicius K. et al. PNAS, 103 (2006) 9280-9285 (2) Dhakal BK et al. Biochemical and Biophysical Research Communications, 346 (2006) 751-757.

Glen Ernstrom et al. (2006) Neuronal Development, Synaptic Function, and Behavior Meeting "Defining the Role of the V-ATPase in Neurotransmission"

Erik Jorgensen, Glen Ernstrom, Mark Palfreyman, Shigeki Watanabe

[Neuronal Development, Synaptic Function, and Behavior Meeting, 2006]

Neurotransmitter release depends on the fusion of neurotransmitter-loaded vesicles with the plasma membrane. Recent studies in yeast and Drosophila have implicated subunits of the Vo sector of the V-ATPase as acting at a late step of neurotransmitter release. The Vo sector is one half of a multi-subunit complex that functions as a proton pump when assembled with an ATP-hydrolyzing V1 sector. A proton gradient established by the V-ATPase is necessary for vesicular neurotransmitter loading, but the yeast and Drosophila studies implicate Vo subunits as having an additional role in vesicle fusion. We are investigating the role of V-ATPase by characterizing neuromuscular transmission in two C. elegans partial loss-of-function V-ATPase mutants: vha-12(n2915) disrupts the "B" subunit of ATP-hydrolyzing V1 sector of the V-ATPase, and unc-32(e189) eliminates a neural-specific isoform of the Vo "a" subunit. Using a vesicle-targeted pH-sensitive GFP, we find that both n2915 and e189 mutants have acidification defects. Interestingly, we find no reduction in the amplitudes of the miniature postsynaptic current events. We hypothesize acidification is inefficient in the V-ATPase mutants, but the mutant V-ATPase can eventually provide a gradient that allows neurotransmitter loading to proceed. Analysis of the frequency of postsynaptic events in the V-ATPase mutants reveals a reduction in the rate of fusion events in both V1 and Vo mutants. We are now testing a model in which partially acidified vesicles are not competent to fuse -- a checkpoint mechanism that is enhanced by hypomorphic mutations of the V-ATPase.

Yonju Ji et al. (2003) International Worm Meeting "The E subunit of vacuolar-type H+-ATPase (vha-8) is essential for embryogenesis and yolk transfer in C. elegans"

Yonju Ji, Joohong Ahnn, Kyu Yeong Choi

[International Worm Meeting, 2003]

Vacuolar H+-ATPases (V-ATPases) are ATP-dependent proton pumps composed of peripheral V1 sector and membrane-bound V0 sector. It is localized at membranes of intracellular acidic organelles and plasma membranes of various cell types. By virtue of its regulation in acidification, V-ATPase is required for many intracellular processes such as receptor-mediated endocytosis and protein sorting. We have characterized the E subunit of V-ATPase in C. elegans. This subunit is one of the most well conserved subunits sharing approximately 57% identity with the human homologue, ATP6E. Green fluorescent protein (GFP) and whole-mount immunostaining analyses showed that V-ATPase E subunit (vha-8) abundantly expresses in the H-shaped excretory cell, consistent with the expression patterns observed for other V-ATPase subunits. RNA mediated interference targeted to vha-8 resulted in embryonic and larval lethality indicating that vha-8 is essential during early developmental processes. Recently, we have isolated a deletion mutant of vha-8, which shows embryonic lethality. We are currently characterizing this mutant in order to elucidate the functional roles of V-ATPase during early embryogenesis as well as in receptor-mediated endocytosis.

Baer, Charles F. et al. (2013) International Worm Meeting "Revisiting the effects of spontaneous mutations on the (micro)environmental variance in Caenorhabditis."

Farhadifar, Reza, Baer, Charles F., Andersen, Erik C., Needleman, Daniel

[International Worm Meeting, 2013]

An obvious feature of living organisms is that their development is robust to variation in the environmental circumstances in which the organism finds itself - within limits. That is, the phenotype is more or less "canalized" (canalized "robust"). The "more or less" is of considerable interest to evolutionary biologists, for a variety of reasons, i.e., under what environmental or genetic circumstances does development become more or less canalized? Environmental canalization can be quantified as the phenotypic variation among genetically identical individuals raised in a uniform environment - the "(micro)environmental variance" in the lingo of quantitative genetics, V(E). Here we provide quantitative estimates of the effects of spontaneous mutations on V(E) for a variety of phenotypic traits subject to different selective regimes. Three general quantitative trends emerge. First, in almost all cases, mutation accumulation tends to de-canalize the phenotype (i.e., V(E) increases), typically at a rate similar to the rate of change of the trait itself. Second, there is a strong positive association between the rate of increase of V(E) for a trait and the mutational variance, V(M) for the trait itself. Third, and most intriguingly, mutations affecting V(E) for a trait appear to be usually under stronger selection than mutations affecting the trait itself.

Mallapur S et al. (1996) East Coast Worm Meeting "MAPPING THE BIOLOGICAL ACTIVITIES OF NETRIN UNC-6 TO SPECIFIC PROTEIN DOMAINS"

Wadsworth WG, Mallapur S

[East Coast Worm Meeting, 1996]

UNC-6 is a laminin related protein required for circumferential migrations of pioneering axons and mesodermal cells in C. elegans. Vertebrate homologs, the netrins, have been proposed to act as chemoattractants and chemorepellants for migrating axons in the embryonic nervous system. UNC-6 is predicted to be a secreted protein with five structural domains. The N-terminal domains VI and V (V-1,V-2,V-3) are homologous to laminin-g except small region of domain VI and domain V-2 that are homologous to laminin-b. The C-terminal, C domain, is unique. The homology of domain VI to laminin suggests that UNC-6 interacts with the basement membrane through this domain. Molecular analysis of unc-6 alleles suggests that specific functions are coded by different domains. For example, alleles that delete specifically domain V-2 affect only dorsal migrations whereas an allele carrying a mutation in domain VI selectively disrupts ventral migrations. Another allele that has a different mutation in domain VI disrupts mesodermal but not axonal migrations. We have suggested that the V-2 domain mediates binding to the UNC-5 receptor for dorsal migrations and that mutations in domain VI affects the display of UNC-6 on the face of the basement membrane. Our goal is to study structure-function relationships of UNC-6. Since several EGF-like repeats of laminin have been proposed to form binding sites for cellular receptors, the unc-6 domains V-1, V-2, V-3 might be the ligands for receptors on growth cones and migrating cells. Therefore, we have constructed synthetic alleles of unc-6 containing deletions of EGF-like repeats. We have also constructed an allele that has the V-2 domain replaced by domain V-3 to test whether domain V-3 can functionally substitute for domainV-2. If so, it may indicate that the spacing between EGF-like repeats is critical and not the sequence. We have constructed an allele with a deletion of C domain to examine its effect on axonal and mesodermal migrations. The C domain is rich in basic amino acids and may tether netrins to other molecules for display on the cell surfaces or it may bind to unique matrix sites. We will also test whether a distinct function is associated with the unique and highly conserved laminin-b like region of domain VI. For these experiments, we have designed an assay system that provides a strong selection for loss of function alleles. Our screen first measures the ability to rescue a select phenotype, either movement (dorsal guidance function) or egg laying (ventral guidance function). Further analysis details if other functions of unc-6 are affected. This study may discover new functions associated with specific domains of unc-6. Since netrins are highly conserved from nematodes to chordates and contain structures found in other extracellular matrix proteins, this analysis will provide insights into how such protein domains interact with their cellular receptors and the extracellular matrix.

Rakesh K Bodhicharla et al. (2009) European Worm Neurobiology Meeting "Transgenic Nematodes as a model for Parkinson disease"

David De Pomerai, Jody Winter, Rakesh K Bodhicharla

[European Worm Neurobiology Meeting, 2009]

Amyloid aggregation of the abundant neural protein alpha-synuclein contributes to cellular toxicity in Parkinson.s disease. We have created transgenic nematodes carrying fusion constructs encoding human alpha-synuclein tagged with YFP and/or CFP as a fluorescent marker. Using the unc-54 myosin promoter, a synuclein-YFP (unc-54::SV) fusion construct is abundantly expressed in the body wall muscles of Caenorhabditis elegans. Similar constructs, i.e. (i) unc-54::V, (ii) unc-54::S + unc-54::V, and (iii) unc-54::SC + unc-54::SV, were also injected. Permanent integrated lines were successfully generated for unc-54::V, (ii) unc-54::S + unc-54::V, and (iii) unc-54::SC + unc-54::SV, using gamma irradiation but we were unable to get integrated unc-54::SV transgenic worms. A non-integrated unc-54::SV strain was found to be radiation sensitive when compared with wild type N2 worms and unc-54::V. In order to investigate further, two different lines of unc-54::SV and unc-54::S + unc-54::V were irradiated at different dose rates to determine radiation sensitivity. Comparing these transgenic worms with wild type N2 worms, we found there was a drastic effect of gamma irradiation on the frequency of sterility in the F1 generation as compared to F0. we have shown that unc-54::SV, unc-54::S + unc-54::V and unc-54::SC+ unc-54::SV worms have a significantly shorter life span than either N2 or unc-54::V strain worms. We also found that the locomotion and pharyngeal pumping rates were significantly reduced in transgenic as compared to N2 worms; however brood size and developmental timing were found to be similar in all these transgenic strains and in wild type N2 worms. The radiation-sensitivity, shortened life span, lower pharyngeal pumping rates and slower movement of these transgenic synuclein-expressing worms suggest that the presumed aggregation of the synuclein fusion protein does indeed cause cellular toxicity. Permanent integrated transgenic lines were obtained for unc-54::SC + unc-54::SV, unc-54::C + unc-54::V and unc-54::CV which will be used for assessing earlier events during aggregation using fluorescence-based techniques such as FRET and anisotropy.