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[
WormBook,
2006]
In the last decade, nematodes other than C. elegans have been studied intensively in evolutionary developmental biology. A few species have been developed as satellite systems for more detailed genetic and molecular studies. One such satellite species is the diplogastrid nematode Pristionchus pacificus. Here, I provide an overview about the biology, phylogeny, ecology, genetics and genomics of P. pacificus.
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[
WormBook,
2005]
Asymmetric cell divisions play an important role in generating diversity during metazoan development. In the early C. elegans embryo, a series of asymmetric divisions are crucial for establishing the three principal axes of the body plan (AP, DV, LR) and for segregating determinants that specify cell fates. In this review, we focus on events in the one-cell embryo that result in the establishment of the AP axis and the first asymmetric division. We first describe how the sperm-derived centrosome initiates movements of the cortical actomyosin network that result in the polarized distribution of PAR proteins. We then briefly discuss how components acting downstream of the PAR proteins mediate unequal segregation of cell fate determinants to the anterior blastomere AB and the posterior blastomere P 1 . We also review how a heterotrimeric G protein pathway generates cortically based pulling forces acting on astral microtubules, thus mediating centrosome and spindle positioning in response to AP polarity cues. In addition, we briefly highlight events involved in establishing the DV and LR axes. The DV axis is established at the four-cell stage, following specific cell-cell interactions that occur between P 2 and EMS , the two daughters of P 1 , as well as between P 2 and ABp , a daughter of AB . The LR axis is established shortly thereafter by the division pattern of ABa and ABp . We conclude by mentioning how findings made in early C. elegans embryos are relevant to understanding asymmetric cell division and pattern formation across metazoan evolution.
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[
1984]
Developmental fates of blastomeres in early C. elegans embryos appear to be governed by internally segregating, cell-autonomous determinants. To ascertain whether previously described gut-lineage dterminants are nuclear or cytoplasmic, laser microsurgery was used to show that exposing the nucleus of a non-gut-precursor cell to gut-precursor cytoplasm can cause the progeny of the resulting hybrid cell to express gut-specific differentiation markers, supporting the view that the determinants are cytoplasmic. In attempts to obtain molecular probes for such determinants, a library of monoclonal antibodies to early embryonic antigens was generated and screened by immunofluorescence microscopy for antibodies reacting with lineage-specific components. Three of the antibodies react with cytoplasmic granules (P granules) that segregate specifically with the germ line in early cleavages and are found uniquely in germ-line cells throughout the life cycle. Experiments on unfertilized eggs, on mutant embryos with defects in early cleavage, and on normal embryos treated with various cytoskeletal inhibitors indicate that P-granule segregation depends upon fertilization and requires the function of actin microfilaments, but is independent of spindle and microtubule functions. Work on the biochemical nature and function of the P granules is in progress.
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[
1984]
Germ cells in a wide variety of invertebrate and vertebrate species contain distinctive cytoplasmic organelles that have been visualized by electron microscopy. The ubiliquity of such structures suggests that they play some role in germ-line determination or differentiation, or both. However, the nature and function of these structures remain unknown. We describe experiments with two types of immunologic probes, rabbit sera and mouse monoclonal antibodies, directed against ctyoplamsic granules that are unique to germ-line cells in the nematode, Caenorhabditis elegans, and that may correspond to the germ-line-specific structures seen by electron microscopy in C. elegans embryos. The antibodies have been used to follow the granules, termed P granules, during early embryonic cleavage stages and throughout larval and adult development. P granules become progressively localized to the germ-line precursor cells during early embryogenesis. We are using conditionally lethal maternal-effect mutations to study this localization process. In addition to providing a rapid assay for P granules in wild-type, mutant, and experimentally maipulated embryos, the antibodies also promise to be useful in biochemically characterizing the granules and in investigating their
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[
WormBook,
2005]
In C. elegans, the germ line is set apart from the soma early in embryogenesis. Several important themes have emerged in specifying and guiding the development of the nascent germ line. At early stages, the germline blastomeres are maintained in a transcriptionally silent state by the transcriptional repressor PIE-1 . When this silencing is lifted, it is postulated that correct patterns of germline gene expression are controlled, at least in part, by MES-mediated regulation of chromatin state. Accompanying transcriptional regulation by PIE-1 and the MES proteins, RNA metabolism in germ cells is likely to be regulated by perinuclear RNA-rich cytoplasmic granules, termed P granules. This chapter discusses the molecular nature and possible roles of these various germline regulators, and describes a recently discovered mechanism to protect somatic cells from following a germline fate.
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[
1960]
For the purpose of the present chapter the noun 'cultivation' is to be taken as the maintenance, in the laboratory, of a population of organisms belonging to a desired species through successive generations and subcultures over a prolonged period of time (weeks, months, or years). This is a deliberate restriction of the term. The noun 'culture' is most aptly used for a population within a circumscribed vessel or container (test-tube, Petri dish, U.S. Bureau of Plant Industry watch glass, etc.); it is also used in a looser, more general way (as "in culture") to cover conditions of substantial growth whether or not leading to cultivation in the strict sense
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[
Methods Cell Biol,
1995]
Geneticists like to point out that the ultimate test of a proposed function for a gene and its encoded product (or products) in a living organism involves making a mutant and analyzing its phenotype. This is the goal of reverse genetics: a gene is cloned and sequenced, its transcripts and protein coding sequence are analyzed, and a function may be proposed; one must then introduce a mutation in the gene in a living organism to see what the functional consequences are. The analysis of genetic mosaics takes this philosophy a step further. In mosaics, some cells of an individual are genotypically mutant and other cells are genotypically wild type. One then asks what the phenotypic consequences are for the living organism. This is not the same as asking what cells transcribe the gene or in what cells the protein product of the gene is to be found, but rather it is asking in what cells the wild-type gene is needed for a given function...
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[
1990]
Induction of the C. elegans vulva is a simple example of pattern formation in which the combined action of two intercellular signals specifies three cell types in a precise spatial pattern. These two signals, a graded inductive signal and a short-range lateral signal, are each mediated by a distinct genetic pathway. To understand how these intercellular signals specify cell type, we are studying, by genetic analysis and molecular cloning, genes whose products are involved in the induction pathway.
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[
2000]
Computer tracking of Caenorhabditis elegans, a free-living soil nematode, is a promising tool to assess behavioral changes upon exposure to contaminants. A short life cycle, a known genetic make-up, thoroughly studied behavior, and a completely mapped nervous system make C. elegans an attractive soil test organism with many advantages over the commonly used earthworm. Although many toxicity tests have been performed with C. elegans, the majority focused on mortality, a much less sensitive endpoint than behavior. A computer tracking system has been developed to monitor behavioral changes using C. elegans. Because conditions unrelated to specific toxicant exposures, such as changes in temperature, developmental stage, and presence of adequate food sources, can affect behavior, there is a need to standardize tracking procedures. To this end, we have developed reference charts for control movement comparing the movement of four and five day-old adult nematodes. The use of K-medium versus deionized (DI) H2O for pre-tracking rinses was also investigated. A final reference chart compared the behavioral responses of nematodes at various food densities (i.e. bacterial concentrations).
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[
Methods Cell Biol,
1995]
The number of easily distinguishable mutant phenotypes in Caenorhabditis elegans is relatively small, and this constrains the number of factors that can be followed in standard genetic crosses. Consequently, a new mutation is mapped, first to a chromosome using two-factor data from one or more crosses, and then to a chromosomal subregion by successive three-factor crosses. Mapping would be more efficient if it were possible to score a large number of well-distributed markers in a single cross. The advent of the polymerase chain reaction makes this approach feasible by allowing polymorphic genomic regions to serve as genetic markers that are easily scored in DNA released from individual animals. The only "phenotype" is a band on a gel, so the segregation of many of these markers can be followed in a single cross. Following the terminology proposed by Olsen et al. (1989), we refer to polymorphisms that can be scored by appropriately designed polymerase chain reaction (PCR) assays as polymorphic seqeunce-tagged sites (STSs)...