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[
1971]
This review deals with the biological and physiological characteristics of the Nematoda which may be of significance in studies of biological aging. In general, the discussion is confined to soil-inhabiting nematodes, but supporting evidence is drawn from studies of animal parasitic forms and other kinds of organisms.
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[
Journal of Nematology,
1970]
Reproduction of Aphelenchus avenae, reared on Rhizoctonia solani growing on steamed wheat seeds and Caenorhabditis sp., reared on a mixed bacterial culture grown on oatmeal, was significantly reduced at 5% oxygen and inhibited at 4% oxygen and below. Aeration ranging from atmospheric air (21%) to 10% oxygen had no effect on reproduction. Close interval (5 days or less) fluctuations between high and low oxygen concentrations, inhibited population buildup of Hemicycliophora arenaria on tomato in soil, and of A. avenae and Caenorhabditis sp. in vitro. In soil tests with H. arenaria exposed to 12 hr of nitrogen every three days (in air) inhibited the rate of buildup compared to controls maintained in continuous air. With the in vitro studies, as little as 4 hr nitrogen every 3 days (stored in air) significantly influenced the population numbers.
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[
Journal of Nematology,
1971]
In microaerobic and anaerobic environments the principle glycolytic end-product of A. avenae and Caenorhabditis sp. was lactic acid during the first 12-16 hr, after which it was ethanol. Upon return to aerobiosis, 11C-labeled ethanol in the medium was utilized by the nematodes; 14CO2 and some 14C-labeled glycogen was detected. Total dry weight loss of nonfeeding nematodes was 25% greater in the absence of alcohol than in the presence of ethanol or n-propanol. Physical movement and respiration increased and reproduction was extended by alcohol in the bathing
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[
Journal of Nematology,
1970]
Starving Aphelenchus avenae survived 3-4 weeks in microaerobic and anaerobic environments, but Caenorhabditis sp. survived less than 80 hr. Aerobically, both nematodes metabolize neutral lipid reserves: there was no microaerobic (<5% 02) or anaerobic neutral lipid catabolism. Early in anaerobiosis both nematodes utilized endogenous glycogen. Caenorhabditis sp. depleted the glycogen and died. A. avenae under oxygen stress longer than 120 hr entered cryptobiosis, during which there was neither measurable O2 uptake nor glycogen or neutral lipid utilization. Only when re-aerated, did A. avenae recover and resume "normal" metabolism.
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[
Worm Breeder's Gazette,
1995]
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[
Gene,
1998]
Mammalian Ras proteins associate with multiple effectors, including Raf, Ral guanine nucleotide dissociation stimulator, phosphoinositide 3-kinase and AF-6. In the nematode Caenorhabditis elegans, LIN-45/Raf has been identified genetically as an effector of LET-60/Ras. To search for other effectors in C. elegans, we carried out a yeast two-hybrid screening for LET-60-associating proteins. The screening identified a novel protein, designated Ce-AF-6, which exhibited a strong structural homology with human AF-6, rat Afadin and Drosophila melanogaster Canoe and possessed both the Ras-associating (RA) domain and the PSD-95/DlgA/ZO-1 (PDZ) domain. Ce-AF-6 associated with human Ha-Ras in a GTP-dependent manner, with an efficiency comparable to that of human Raf-1 Ras-binding domain. When the effects of mutations of the Ras effector region residues were examined for associations with various effectors, Ce-AF-6 was found to possess a distinct and the most rigorous requirement for the effector region residues. These results strongly suggest that Ce-AF-6 is a putative effector of Ras that possesses a distinct recognition mechanism for association with Ras.
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[
Acta Biol Hung,
2000]
Classical transmitters and neuroactive peptides act as transmitters or modulators within the central and peripheral nervous systems of nematodes, for example Ascaris suum and Caenorhabditis elegans. Acetylcholine (ACh) and gamma-aminobutyric acid (GABA) are respectively the excitatory and inhibitory transmitters onto somatic body wall muscle while 5-hydroxytrypamine (5-HT) is the excitatory transmitter onto pharyngeal muscle. 5-HT also reduces ACh-induced contractions of somatic muscle and this action of 5-HT is mediated through activation of adenylate cyclase while that on pharyngeal muscle is mediated through inositol phosphate activation. Glutamate, dopamine and octopamine also have transmitter roles in nematodes. Neuroactive peptides of the RFamide family can excite somatic muscle, for example, AF-1 (KNEFIRFamide), AF-2 (KHEYLRFamide), AF-3 (AVPGVLRFamide) and AF-4 (GDVPGVLRFamide) or inhibit and relax this muscle, for example, PF-1 (SDPNFLRFamide), PF-2 (SADPNFLRFamide) and PF-4 (KPNlRFamide). In addition PF-3 (AF-8) (KSAYMRFamide) has a biphasic action on pharyngeal muscle, excitation followed by inhibition while AF-1 only inhibits this muscle. The peptide effects can be either pre- or postsynaptic or both and are likely to be mediated through second messenger systems. In addition these peptides modulate the action of classical transmitters, particularly ACh.
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[
Development,
2022]
Biological systems are increasingly viewed through a quantitative lens that demands accurate measures of gene expression and local protein concentrations. CRISPR/Cas9 gene tagging has enabled increased use of fluorescence to monitor proteins at or near endogenous levels under native regulatory control. However, due to typically lower expression levels, experiments using endogenously-tagged genes run into limits imposed by autofluorescence (AF). AF is often a particular challenge in wavelengths occupied by commonly used fluorescent proteins (GFP, mNeonGreen). Stimulated by our work in C. elegans, we describe and validate Spectral Autofluorescence Image correction By Regression (SAIBR), a simple, platform-independent protocol and FIJI plugin to correct for autofluorescence using standard filter sets and illumination conditions. Validated for use in C. elegans embryos, starfish oocytes and fission yeast, SAIBR is ideal for samples with a single dominant AF source, and achieves accurate quantitation of fluorophore signal and enables reliable detection and quantification of even weakly expressed proteins. Thus, SAIBR provides a highly accessible, low barrier way to incorporate AF correction as standard for researchers working on a broad variety of cell and developmental systems.
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[
International C. elegans Meeting,
1997]
Mammalian Ras proteins regulate multiple effectors including Raf family, RalGDS family and AF-6. To understand all signaling pathways regulated by Let-60 in C. elegans , we screened for Let-60-binding proteins by the yeast two-hybrid system (thanks to Dr. R. Barstead for the lACT-RB2 library). The screen identified partial cDNA clones encoding not only C. elegans Raf but also C. elegans homologs of RalGDS (Ce-RalGDS), of AF-6 (Ce-AF-6), of Cdc25 (Ce-Cdc25) and of phospholipase Cb (Ce-PLCb). Flanking cDNA sequences were obtained by the spliced leader sequence PCR or from Dr. Y. Kohara's EST clones. Ce-RalGDS contained the middle Cdc25 homology domain and the C-terminal Ras-interacting domain (RID) homologous to those of RalGDS. Ce-AF-6 contained the N-terminal RID and the middle GLGF/DHR motif homologous to those of AF-6. Ce-Cdc25 contained a proline-rich region, possible PH domain, and a Cdc25 homology domain similar to that of Cdc25Mm/RasGRF. Ce-PLCb contained PH, X, Y and C2 domains found in mammalian counterpart. However, the N-terminal Cdc25 homology domain (similar to those of Sos proteins) and the C-terminal RID (300 amino acids) of Ce-PLCb were unique. These proteins bound to mammalian Ha-Ras in the two-hybrid system, but the bindings were abolished by various mutations within the effector domain of Ha-Ras. MBP-fusion proteins of Ce-RalGDS RID and Ce-PLCb RID bound Ha-Ras in vitro in a GTP-dependent manner. To examine functions of the newly identified Let-60 effector candidates, worms carrying Tc1-insertions within the genes were isolated (for Ce-RalGDS, Ce-PLCb and Ce-AF-6), and deletion derivatives (only heterozygotes) were obtained (for Ce-RalGDS and Ce-PLCb). Phenotypic analyses will be presented if homozygotes are viable.
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[
Neuronal Development, Synaptic Function and Behavior, Madison, WI,
2010]
Chemical signaling processes of the parasitic nematode Ascaris suum are central in creating a model to understand how nervous systems control behavior. Research is currently being done to isolate and sequence neuropeptides, including the FMRFamide-like (Phe-Met-Arg-Phe-NH2-like) peptides endogenous to A. suum (AF peptides). By associating neuropeptide localization and sequence information with observed behavioral effects, we hope to better explain the chemical signaling processes of the nematode nervous system. In this study, the effects of two groups of endogenous AF peptides were measured by monitoring the inhibition or potentiation of acetylcholine induced contraction on A. suum dorsal muscle strips. The AF peptides in each group have been isolated from the same cell and are encoded by the same transcript; their amino acid sequences are similar but differ by the presence or absence of P (Pro) preceding a stereotyped NFLRFa (Asn-Phe-Leu-Arg-Phe-NH2) ending. A comparison of the AF peptide groups was used to determine if subtle sequence differences function to amplify similar or generate diverse behavioral effects. Experiments demonstrate that peptides from both groups act to inhibit acetylcholine induced dorsal muscle contraction with varying efficacy and time course.