Epigenetic mechanisms, including histone modifications, have been found to regulate both aging and germline function. We discovered two highly homologous SET domain containing proteins, SET-9 and SET-26, to regulate lifespan and germline function in C. elegans. Specifically, lacking somatic
set-26 extends lifespan, whereas deficiency of both
set-9 and
set-26 causes a severe germline defect. Both SET-9 and SET-26 have a PHD domain and a SET domain. We showed that the PHD domains of SET-9 and SET-26 bind to H3K4me3 in vitro and the genomic distributions of SET-9 and SET-26 are highly correlated with H3K4me3 marking in vivo, supporting a model that SET-9 and SET-26 are recruited to H3K4me3 marked regions in C. elegans. Although previous report suggested that the SET domain of SET-26 can deposit H3K9me3 in vitro, we found that loss of
set-9 and
set-26 does not affect global H3K9me3 levels. On the other hand, we detected elevated levels and expansion of H3K4me3 marking around SET-9 & SET-26 binding sites in the
set-9 set-26 double mutant, suggesting that SET-9 & SET-26 normally help to restrict H3K4me3 marking. Interestingly, the spreading of H3K4me3 was not associated with gene expression changes. On the other hand, we revealed that some of the loci bound by SET-9 & SET-26 show gene expression changes in the
set-9 set-26 mutants. We conclude that SET-9 & SET-26 may have dual roles in regulating gene expression and in restricting H3K4me3 deposition.