Natural populations of C. elegans are polymorphic for the ability of males to deposit a copulatory plug after mating. Plugs have a mate-guarding function in this species (Barker 1994, Animal Behaviour 48:147), and the polymorphism is due to allelic variation at the
plg-1 locus (Hodgkin and Doniach 1997, Genetics 146:149). We hypothesized that the polymorphism is caused by a loss-of-function mutation because (1) plugging is likely to be ancestral, since plugs have been observed in other Caenorhabditis species; (2) the plugging allele is dominant; and (3) males are rare in natural populations, so a mate-guarding function is probably dispensable. To test this hypothesis, we have identified the molecular basis for the
plg-1 polymorphism. We narrowed the location of
plg-1 to a 76-kb interval using a combination of recombination and physical-mapping experiments. We then discovered that natural populations of C. elegans are polymorphic for the presence of a retrotransposon insertion (Cer-1) within this genomic interval. Interestingly, this retrotransposon is inserted within genomic sequence that is predicted to code for a mucin-like protein. Furthermore, the insertion is present in all of 45 non-plugging isolates, but absent in all of 92 plugging isolates that we tested. RT-PCR experiments showed that the mucin-like gene is transcribed in adult males, but not in adult hermaphrodites, of plugging strains. In contrast, the transcript was not observed in non-plugging strains, suggesting that the retrotransposon blocks transcription of the mucin-like protein. The results of RNAi knockdown and transgenic rescue experiments confirmed the identity of the mucin-like protein as the
plg-1 gene. The
plg-1 polymorphism is caused by a naturally segregating retrotransposon insertion that disrupts production of a structural component of the copulatory plug.