WBPaper00060014:set-2(tm1630)_upregulated

DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.

WBPaper00060014:set-2(zr2012)_downregulated

DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. Transcripts that showed significantly decreased expression in set-2(zr2012) animals at embryo stage, comparing to in N2 animals.

WBPaper00060014:set-2(zr2012)_upregulated

DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. Transcripts that showed significantly increased expression in set-2(zr2012) animals at embryo stage, comparing to in N2 animals.

WBPaper00060014:set-2(tm1630)_downregulated

DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. Transcripts that showed significantly decreased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.

WBPaper00051069:isp-1(qm150)_downregulated

Differential gene expression analysis was performed using the edgeR package v. 3.14.0 in R v.3.3.0. (q < 0.05). Transcripts that showed significantly decreased expression in isp-1(qm150) comparing to in N2.

WBPaper00051069:isp-1(qm150)_upregulated

Differential gene expression analysis was performed using the edgeR package v. 3.14.0 in R v.3.3.0. (q < 0.05). Transcripts that showed significantly increased expression in isp-1(qm150) comparing to in N2.

WBPaper00053810:nuo-6(qm200)_upregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly increased expression in nuo-6(qm200) comparing to in N2.

WBPaper00053810:sod-2(ok1030)_downregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly decreased expression in sod-2(ok1030), comparing to in N2.

WBPaper00053810:daf-2(e1370)_upregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2.

WBPaper00053810:daf-2(e1370)_downregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.