WBPaper00060014:set-2(tm1630)_upregulated

DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.

WBPaper00060014:set-2(zr2012)_downregulated

DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. Transcripts that showed significantly decreased expression in set-2(zr2012) animals at embryo stage, comparing to in N2 animals.

WBPaper00060014:set-2(zr2012)_upregulated

DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. Transcripts that showed significantly increased expression in set-2(zr2012) animals at embryo stage, comparing to in N2 animals.

WBPaper00060014:set-2(tm1630)_downregulated

DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. Transcripts that showed significantly decreased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.

WBPaper00064933:E.coli-binding_secret_protein

N.A. Secreted proteins that bind E. coli pellet.

WBPaper00056090:E.faecalis_downregulated_N2

Cuffcompare and Cuffdiff Transcripts that showed significantly decreased expression in N2 after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.

WBPaper00056090:E.faecalis_upregulated_N2

Cuffcompare and Cuffdiff Transcripts that showed significantly increased expression in N2 after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.

[cgc6390]:Cluster_E

hierarchical clustering Germline-enriched and sex-biased expression profile cluster E.

WBPaper00061007:HB101_downregulated

DESeq2 fold change > 2, p-value < 0.01. Transcripts that showed significantly decreased expression after fed by bacteria E. coli HB101 for 30 generations comparing to animals fed by E. coli OP50.

WBPaper00061007:HB115_downregulated

DESeq2 fold change > 2, p-value < 0.01. Transcripts that showed significantly decreased expression after fed by bacteria E. coli HB115 for 30 generations comparing to animals fed by E. coli OP50.