- [cgc6390]:Cluster_D
hierarchical clustering
Germline-enriched and sex-biased expression profile cluster D.
- WBPaper00033070:Elbe_downregulated
[ANOVA, p < 0.05 without multiple sample correction, fold-change to reference sediment Danube (D) > 1.4 (up-regulated) or < 0.7 (down-regulated)].
Genes with significantly changing transcripts in C. elegans exposed to the Elbe (E) sediment.
- WBPaper00033070:Elbe_upregulated
[ANOVA, p < 0.05 without multiple sample correction, fold-change to reference sediment Danube (D) > 1.4 (up-regulated) or < 0.7 (down-regulated)].
Genes with significantly changing transcripts in C. elegans exposed to the Elbe (E) sediment.
- WBPaper00033070:Rhine_downregulated
[ANOVA, p < 0.05 without multiple sample correction, fold-change to reference sediment Danube (D) > 1.4 (up-regulated) or < 0.7 (down-regulated)].
Genes with significantly changing transcripts in C. elegans exposed to the Rhine (R) sediment.
- WBPaper00033070:Rhine_upregulated
[ANOVA, p < 0.05 without multiple sample correction, fold-change to reference sediment Danube (D) > 1.4 (up-regulated) or < 0.7 (down-regulated)].
Genes with significantly changing transcripts in C. elegans exposed to the Rhine (R) sediment.
- WBPaper00061040:FW1256_upregulated
The DESeq2 package (v1.24.0) was used to identify differentially expressed genes (DEGs). Fold change > 2, FDR < 0.05.
Transcripts that showed significantly increased expression after animals were exposed to 500 uM of 3-dihydro-2-phenyl-sulfanylenebenzo[d] [1,3,2]-oxazaphosphole (FW1256) from L1 stage larvae onwards.
- WBPaper00061040:FW1256_downregulated
The DESeq2 package (v1.24.0) was used to identify differentially expressed genes (DEGs). Fold change > 2, FDR < 0.05.
Transcripts that showed significantly decreased expression after animals were exposed to 500 uM of 3-dihydro-2-phenyl-sulfanylenebenzo[d] [1,3,2]-oxazaphosphole (FW1256) from L1 stage larvae onwards.
- WBPaper00031060:2-deoxy-D-glucose_upregulated
Ratios for transcript-level regulation as control- over DOG-treated signal intensities were obtained to illustrate the extent of regulation (Affymetrix GCOS 1.4 software; threshold for downregulation was set to 1.50 and for upregulation to 0.66).
Genes that showed increased expression after treated with 2-deoxy-D-glucose.
- WBPaper00031060:2-deoxy-D-glucose_downregulated
Ratios for transcript-level regulation as control- over DOG-treated signal intensities were obtained to illustrate the extent of regulation (Affymetrix GCOS 1.4 software; threshold for downregulation was set to 1.50 and for upregulation to 0.66).
Genes that showed decreased expression after treated with 2-deoxy-D-glucose.