WBPaper00038168:lin-35_downregulated

For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis. Genes that were downregulated in lin-35.

WBPaper00038168:lin-35_upregulated

For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis. Genes that were upregulated in lin-35.

WBPaper00038168:lin-15B(n744)_downregulated

For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis. Genes that were downregulated in lin-15B(n744).

WBPaper00038168:lin-15B(n744)_upregulated

For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis. Genes that were upregulated in lin-15B(n744).

[cgc6390]:Cluster_B

hierarchical clustering Germline-enriched and sex-biased expression profile cluster B.

WBPaper00052881:B.subtilis-biofilm_upregulated

CuffDiff q-value < 0.05. Transcripts that showed significantly increased expression after the formation of B. subtilis biofilm

WBPaper00052881:B.subtilis-biofilm_downregulated

CuffDiff q-value < 0.05. Transcripts that showed significantly decreased expression after the formation of B. subtilis biofilm

WBPaper00051164:Nel-protein-infection_regulated

p<0.05 Proteins that showed differential expression after 4 hours of treatment by bacterium B. thuringiensis YBT1520 Nel protein that can cause necrosis.

WBPaper00066610:Leptomycin-B_upregulated_25C_20h

p < 0.01, logFC > 1 or p < 0.01, logFC < -1. Transcripts that showed significantly increased expression in animals exposed to Leptomycin B for 20 hours at 25C.

WBPaper00066610:Leptomycin-B_upregulated_2C_3h

p < 0.01, logFC > 1 or p < 0.01, logFC < -1. Transcripts that showed significantly increased expression in animals exposed to Leptomycin B for 3 hours at 2C.