- WBPaper00052868:ALA_downregulated
Genes showing a p-value < 0.05 after adjustment for multiple testing using the Benjamini-Hochberg method were considered to be differentially expressed.
Transcripts that showed significantly decreased expression after exposure to 5mM w-3 fatty acid alpha-linolenic acid (ALA) for 18 hours.
- WBPaper00052868:ALA_upregulated
Genes showing a p-value < 0.05 after adjustment for multiple testing using the Benjamini-Hochberg method were considered to be differentially expressed.
Transcripts that showed significantly increased expression after exposure to 5mM w-3 fatty acid alpha-linolenic acid (ALA) for 18 hours.
- WBPaper00061340:G2_and_W_blasts
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in G2, W cell according to single cell RNAseq.
- WBPaper00038168:lin-35_downregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were downregulated in lin-35.
- WBPaper00038168:lin-35_upregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were upregulated in lin-35.
- WBPaper00038168:lin-15B(n744)_downregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were downregulated in lin-15B(n744).
- WBPaper00038168:lin-15B(n744)_upregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were upregulated in lin-15B(n744).