- WBPaper00061393:C.albicans_regulated
Fold change >= 2 and p <= 0.05. Only the top 29 genes are shown here.
Top 29 transcripts that showed significantly altered expression after C. albicans infection.
- WBPaper00065623:29
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 29 expressed in: Body wall muscle anterior.
- WBPaper00059191:hsp-16.2p-LIN-29_upregulated
DESeq2 v.1.12.3, FDR < 0.05, fold change > 1.7.
Transcripts that showed significantly increased expression in animals carrying hsp-16.2p-LIN-29 (induced at early L3 larva stage), comparing to animals carrying empty vectors.
- WBPaper00059191:hsp-16.2p-LIN-29_downregulated
DESeq2 v.1.12.3, FDR < 0.05, fold change > 1.7.
Transcripts that showed significantly decreased expression in animals carrying hsp-16.2p-LIN-29 (induced at early L3 larva stage), comparing to animals carrying empty vectors.
- WBPaper00042178:hlh-29(tm284)_downregulated
The T-test was performed to find the candidates for differential expression, and genes with significant signal level between different conditions (p < 0.05) were collected. In addition, fold change analysis were performed on the genes with significant expression, and all genes showing greater than two-fold change were considered putative targets.
Genes down regulated by 2.0 fold or greater in hlh-29(tm284) mutants.
- WBPaper00042178:hlh-29(tm284)_upregulated
The T-test was performed to find the candidates for differential expression, and genes with significant signal level between different conditions (p < 0.05) were collected. In addition, fold change analysis were performed on the genes with significant expression, and all genes showing greater than two-fold change were considered putative targets.
Genes up regulated by 2.0 fold or greater in hlh-29(tm284) mutants.
- WBPaper00061527:tnt-4-myo-1_2160
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 29, tnt-4-myo-1_2160, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00061527:ZK970.7-nlp-29
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 185, ZK970.7-nlp-29, on the genome-wide coexpression clique map for the nematode GPL200 platform.