- WBPaper00055897:heat-shock_upregulated
DESeq, FDR < 0.05, log 2 fold change > 2.
Transcripts that showed significantly increased expression after heat shock at 34C for 75 min, recovered at room temperature for 20min and incubated at 20C for 3 hours.
- WBPaper00055897:heat-shock_downregulated
DESeq, FDR < 0.05, log 2 fold change > 2.
Transcripts that showed significantly decreased expression after heat shock at 34C for 75 min, recovered at room temperature for 20min and incubated at 20C for 3 hours.
- WBPaper00049098:heat-induced_N2
The Bio-conductor R package of DEseq was used for this analysis. Heat-induced genes were defined as genes with at least twofold increase in their mean mRNA expression levels at 23C over the ones at 15C (FDR <= 0.1) in both biological repeats. Heat-repressed genes were defined as genes with at least two-fold decreases in their mean mRNA expression levels at 23C over the ones at 15C (FDR <= 0.1) in both biological repeats.
Transcripts that were induced in N2 animals by multigenerational heat stress.
- WBPaper00049736:15deg-then-25deg(12hr)_upregulated_N2
To select nuclear-hormone-receptor mutants for the cold-tolerance test, authors set the q-value threshold at q < 0.05, except that nhr-88, 113, 145, 172 and 207 were picked up from the genes with q < 0.25 in comparing between 15C-cultivated wild-type and wild-type cultivated at 25C for 12 h after cultivation at 15C.
Transcripts up regulated when animals were grown at 15 degree and then at 25 degree for 12 hours, comparing to animals grown up at 15 degree.
- WBPaper00049098:heat-repressed_N2
The Bio-conductor R package of DEseq was used for this analysis. Heat-induced genes were defined as genes with at least twofold increase in their mean mRNA expression levels at 23C over the ones at 15C (FDR <= 0.1) in both biological repeats. Heat-repressed genes were defined as genes with at least two-fold decreases in their mean mRNA expression levels at 23C over the ones at 15C (FDR <= 0.1) in both biological repeats.
Transcripts that were repressed in N2 animals by multigenerational heat stress.
- WBPaper00049736:15deg-then-25deg(12hr)_downregulated_N2
To select nuclear-hormone-receptor mutants for the cold-tolerance test, authors set the q-value threshold at q < 0.05, except that nhr-88, 113, 145, 172 and 207 were picked up from the genes with q < 0.25 in comparing between 15C-cultivated wild-type and wild-type cultivated at 25C for 12 h after cultivation at 15C.
Transcripts down regulated when animals were grown at 15 degree and then at 25 degree for 12 hours, comparing to animals grown up at 15 degree.
- WBPaper00049098:heat-induced_hrde-1(tm1200)
The Bio-conductor R package of DEseq was used for this analysis. Heat-induced genes were defined as genes with at least twofold increase in their mean mRNA expression levels at 23C over the ones at 15C (FDR <= 0.1) in both biological repeats. Heat-repressed genes were defined as genes with at least two-fold decreases in their mean mRNA expression levels at 23C over the ones at 15C (FDR <= 0.1) in both biological repeats.
Transcripts that were induced in hrde-1(tm1200) animals by multigenerational heat stress.
- WBPaper00049098:heat-repressed_hrde-1(tm1200)
The Bio-conductor R package of DEseq was used for this analysis. Heat-induced genes were defined as genes with at least twofold increase in their mean mRNA expression levels at 23C over the ones at 15C (FDR <= 0.1) in both biological repeats. Heat-repressed genes were defined as genes with at least two-fold decreases in their mean mRNA expression levels at 23C over the ones at 15C (FDR <= 0.1) in both biological repeats.
Transcripts that were repressed in hrde-1(tm1200) animals by multigenerational heat stress.