WBPaper00035892:Y.pestis_regulated

ANOVA t-test and fold-change calculations were performed using GeneSpring software. Genes changed expression level after Y. pestis KIM5 treatment. P-value < 0.05.

WBPaper00051069:isp-1(qm150)_downregulated

Differential gene expression analysis was performed using the edgeR package v. 3.14.0 in R v.3.3.0. (q < 0.05). Transcripts that showed significantly decreased expression in isp-1(qm150) comparing to in N2.

WBPaper00051069:isp-1(qm150)_upregulated

Differential gene expression analysis was performed using the edgeR package v. 3.14.0 in R v.3.3.0. (q < 0.05). Transcripts that showed significantly increased expression in isp-1(qm150) comparing to in N2.

WBPaper00045865:biofilm_upregulated_A

Results are presented as the relative up- or downregulation for genes with a difference of 2 fold or more after analyzing expression and using confidence limits with multiple testing corrections (Benjamini-Hochberg FDR). Genes that significantly increased expression 1 our after biofilm was formed by Y. pseudotuberculosis YP III comparing to worms infected by Y. pseudotuberculosis 3384 mutant (that do not form biofilm)

WBPaper00045865:biofilm_downregulated_A

Results are presented as the relative up- or downregulation for genes with a difference of 2 fold or more after analyzing expression and using confidence limits with multiple testing corrections (Benjamini-Hochberg FDR). Genes that significantly decreased expression 1 our after biofilm was formed by Y. pseudotuberculosis YP III comparing to worms infected by Y. pseudotuberculosis 3384 mutant (that do not form biofilm)

WBPaper00053810:nuo-6(qm200)_upregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly increased expression in nuo-6(qm200) comparing to in N2.

WBPaper00053810:sod-2(ok1030)_downregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly decreased expression in sod-2(ok1030), comparing to in N2.

WBPaper00053810:daf-2(e1370)_upregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2.

WBPaper00053810:daf-2(e1370)_downregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.

WBPaper00053810:clk-1(qm30)_downregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly decreased expression in clk-1(qm30) comparing to in N2.