WBPaper00041075:hcf-1(-)_skn-1(+)_downregulated

N.A. Reanalyzing previously published data.Authors compared the genes differentially expressed in hcf-1(pk924) mutant worms relative to N2 wild-type worms (referred to as hcf-1(-) profile) (Rizki et al., 2011) to those changed in wild-type worms treated with control RNAi relative to skn-1 RNAi (referred to as skn-1 (+) profile) (Oliveira et al., 2009). Genes that were down regulated in the absence of hcf-1 and the presence of skn-1.

WBPaper00041075:hcf-1(-)_skn-1(+)_upregulated

N.A. Reanalyzing previously published data.Authors compared the genes differentially expressed in hcf-1(pk924) mutant worms relative to N2 wild-type worms (referred to as hcf-1(-) profile) (Rizki et al., 2011) to those changed in wild-type worms treated with control RNAi relative to skn-1 RNAi (referred to as skn-1 (+) profile) (Oliveira et al., 2009). Genes that were up regulated in the absence of hcf-1 and the presence of skn-1.

WBPaper00040184:hcf-1down_sir-2.1down_daf-2up

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes downregulated in hcf-1(-), downregulated in sir-2.1(O/E) and upregulated in daf-2(-).

WBPaper00040184:hcf-1down_sir-2.1up_daf-2up

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes downregulated in hcf-1(-), upregulated in sir-2.1(O/E) and upregulated in daf-2(-).

WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes with no change in hcf-1(-), no change in sir-2.1(O/E) and downregulated in daf-2(-).

WBPaper00040184:hcf-1nc_sir-2.1up_daf-2nc

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes with no change in hcf-1(-), upregulated in sir-2.1(O/E) and no change in daf-2(-).

WBPaper00040184:hcf-1up_sir-2.1up_daf-2up

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes upregulated in hcf-1(-), upregulated in sir-2.1(O/E) and upregulated in daf-2(-).

WBPaper00040184:hcf-1down_sir-2.1nc_daf-2nc

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes downregulated in hcf-1(-), no change in sir-2.1(O/E) and no change in daf-2(-).

WBPaper00040184:hcf-1up_sir-2.1down_daf-2down

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes upregulated in hcf-1(-), downregulated in sir-2.1(O/E) and downregulated in daf-2(-).

WBPaper00040184:hcf-1up_sir-2.1nc_daf-2up

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes upregulated in hcf-1(-), no change in sir-2.1(O/E) and upregulated in daf-2(-).