- WBPaper00044501:gld-1_let-7_regulated
N.A.
Proteins that showed differential expression in (B) let-7(mg279);[let-7 sponge] when comparing to (A) [let-7 sponge], and in (C) gld-1(op236); let-7(mg279);[let-7 sponge] when comparing to (A) [let-7 sponge]
- WBPaper00035227:bio-electrospray_regulated
Differences between treatments were visualized by principal component analysis (PCA) plotting with MeV/TM4. Data were initially filtered out for missing values and then subjected to a CLEAR test that combines differential expression and variability using the GEPAS web server at http://www.gepas.org. In our case, the false discovery rate was set to a stringent level of 5 per cent.
Genes regulated by bio-electrospray.
- WBPaper00035227:heat_shock_regulated
Differences between treatments were visualized by principal component analysis (PCA) plotting with MeV/TM4. Data were initially filtered out for missing values and then subjected to a CLEAR test that combines differential expression and variability using the GEPAS web server at http://www.gepas.org. In our case, the false discovery rate was set to a stringent level of 5 per cent.
Genes regulated by heat shock.
- WBPaper00062103:neuron_enriched
DESEQ2, fold change > 2 and FDR < 0.01.
Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.
- WBPaper00044316:CH3HgCl_0.75uM_upregulated
Rosetta Resolver was used to identify differentially expressed genes using an error-weighted, 1-way ANOVA with a Bonferroni correction. A 2-fold change in expression, relative to untreated controls, and a p-value < 0.01 was required for a gene to qualify as significantly, differentially expressed.
Genes that showed increased expression after exposure to 0.75uM CH3HgCl for 24 hours.
- WBPaper00044316:HgCl2_7.5uM_downregulated
Rosetta Resolver was used to identify differentially expressed genes using an error-weighted, 1-way ANOVA with a Bonferroni correction. A 2-fold change in expression, relative to untreated controls, and a p-value < 0.01 was required for a gene to qualify as significantly, differentially expressed.
Genes that showed decreased expression after exposure to 7.5uM HgCl2 for 24 hours.
- WBPaper00044316:HgCl2_7.5uM_upregulated
Rosetta Resolver was used to identify differentially expressed genes using an error-weighted, 1-way ANOVA with a Bonferroni correction. A 2-fold change in expression, relative to untreated controls, and a p-value < 0.01 was required for a gene to qualify as significantly, differentially expressed.
Genes that showed increased expression after exposure to 7.5uM HgCl2 for 24 hours.
- WBPaper00044316:CH3HgCl_2.0uM_downregulated
Rosetta Resolver was used to identify differentially expressed genes using an error-weighted, 1-way ANOVA with a Bonferroni correction. A 2-fold change in expression, relative to untreated controls, and a p-value < 0.01 was required for a gene to qualify as significantly, differentially expressed.
Genes that showed decreased expression after exposure to 2.0uM CH3HgCl for 24 hours.
- WBPaper00044316:HgCl2_2.0uM_upregulated
Rosetta Resolver was used to identify differentially expressed genes using an error-weighted, 1-way ANOVA with a Bonferroni correction. A 2-fold change in expression, relative to untreated controls, and a p-value < 0.01 was required for a gene to qualify as significantly, differentially expressed.
Genes that showed increased expression after exposure to 2.0uM HgCl2 for 24 hours.