- [cgc5767]:expression_class_MD
A modified Welch F statistic was used for ANOVA. For each gene, regressed error estimates were substituted for observed error estimates. The substitution is justified by the lack of consistency among the most and least variable genes at each time point. Regressed error estimates were abundance-dependent pooled error estimates that represented a median error estimate from a window of genes of similar abundance to the gene of interest. A randomization test was used to compute the probability Pg of the observed F statistic for gene g under the null hypothesis that developmental time had no effect on expression. P-values were not corrected for multiple testing.
Maternal degradation class (MD): genes that are the subset of maternal genes that decrease without first increasing in abundance.
- [cgc5767]:expression_class_MD_pd(23_min)
A modified Welch F statistic was used for ANOVA. For each gene, regressed error estimates were substituted for observed error estimates. The substitution is justified by the lack of consistency among the most and least variable genes at each time point. Regressed error estimates were abundance-dependent pooled error estimates that represented a median error estimate from a window of genes of similar abundance to the gene of interest. A randomization test was used to compute the probability Pg of the observed F statistic for gene g under the null hypothesis that developmental time had no effect on expression. P-values were not corrected for multiple testing.
Maternal degradation (MD) subclasses are based on the earliest significant decrease (abbreviated pd for primary decrease).
- [cgc5767]:expression_class_MD_pd(41_min)
A modified Welch F statistic was used for ANOVA. For each gene, regressed error estimates were substituted for observed error estimates. The substitution is justified by the lack of consistency among the most and least variable genes at each time point. Regressed error estimates were abundance-dependent pooled error estimates that represented a median error estimate from a window of genes of similar abundance to the gene of interest. A randomization test was used to compute the probability Pg of the observed F statistic for gene g under the null hypothesis that developmental time had no effect on expression. P-values were not corrected for multiple testing.
Maternal degradation (MD) subclasses are based on the earliest significant decrease (abbreviated pd for primary decrease).
- [cgc5767]:expression_class_MD_pd(PC32)
A modified Welch F statistic was used for ANOVA. For each gene, regressed error estimates were substituted for observed error estimates. The substitution is justified by the lack of consistency among the most and least variable genes at each time point. Regressed error estimates were abundance-dependent pooled error estimates that represented a median error estimate from a window of genes of similar abundance to the gene of interest. A randomization test was used to compute the probability Pg of the observed F statistic for gene g under the null hypothesis that developmental time had no effect on expression. P-values were not corrected for multiple testing.
Maternal degradation (MD) subclasses are based on the earliest significant decrease (abbreviated pd for primary decrease).
- [cgc5767]:expression_class_MD_pd(66_min)
A modified Welch F statistic was used for ANOVA. For each gene, regressed error estimates were substituted for observed error estimates. The substitution is justified by the lack of consistency among the most and least variable genes at each time point. Regressed error estimates were abundance-dependent pooled error estimates that represented a median error estimate from a window of genes of similar abundance to the gene of interest. A randomization test was used to compute the probability Pg of the observed F statistic for gene g under the null hypothesis that developmental time had no effect on expression. P-values were not corrected for multiple testing.
Maternal degradation (MD) subclasses are based on the earliest significant decrease (abbreviated pd for primary decrease).
- [cgc5767]:expression_class_MD_pd(53_min)
A modified Welch F statistic was used for ANOVA. For each gene, regressed error estimates were substituted for observed error estimates. The substitution is justified by the lack of consistency among the most and least variable genes at each time point. Regressed error estimates were abundance-dependent pooled error estimates that represented a median error estimate from a window of genes of similar abundance to the gene of interest. A randomization test was used to compute the probability Pg of the observed F statistic for gene g under the null hypothesis that developmental time had no effect on expression. P-values were not corrected for multiple testing.
Maternal degradation (MD) subclasses are based on the earliest significant decrease (abbreviated pd for primary decrease).
- WBPaper00062606:rotenone_downregulated
edgeR version 3.24.3
Transcripts that showed significantly decreased expression in N2 animals exposed to 0.5 uM of rotenone from embryo to L4 larva stage comparing to animals exposed to DMSO.
- WBPaper00062606:rotenone_upregulated
edgeR version 3.24.3
Transcripts that showed significantly increased expression in N2 animals exposed to 0.5 uM of rotenone from embryo to L4 larva stage comparing to animals exposed to DMSO.