WBPaper00061530:nhr-49(e2144)_downregulated

Fold change > 2, p Value of < 0.05 and a false discovery rate (FDR) of < 0.05. Transcripts that showed significantly decreased expression in AGP22 [nhr-49(nr2041)I;glp-1(e2141)III] comparing to in CF1903 [glp-1(e2144)III] at Day 2 adults.

WBPaper00061530:nhr-49(e2144)_upregulated

Fold change > 2, p Value of < 0.05 and a false discovery rate (FDR) of < 0.05. Transcripts that showed significantly increased expression in AGP22 [nhr-49(nr2041)I;glp-1(e2141)III] comparing to in CF1903 [glp-1(e2144)III] at Day 2 adults.

WBPaper00006465:III_ethanol_transient_induction

Class III consists of genes whose transcription level increased significantly at early time points, but not after longer exposure to ethanol.

WBPaper00026640:Development_Group_III

N.A. The expression of group III proteins exhibited a sharp decline and remained at a relatively low level in postembryonic development.

WBPaper00064999:miR-229-64-65-66_upregulated

DESeq2 v1.30.1, fold change > 2, FDR < 0.05. Transcripts that showed significantly increased expression in mir- 229,64,65,66(nDf63) III comparing to in N2 animals.

WBPaper00064999:miR-229-64-65-66_downregulated

DESeq2 v1.30.1, fold change > 2, FDR < 0.05. Transcripts that showed significantly decreased expression in mir- 229,64,65,66(nDf63) III comparing to in N2 animals.

WBPaper00054191:H3.3(null)_embryo_upregulated

Differentially expressed genes were estimated using a General Linear Model approach, negative binomial distribution, and a quasi-likelihood F-test. Genes with a P-value < 0.05 and fold change > 1 were considered significant. Transcripts that showed significantly increased expression in H3.3 null mutant animals (FAS43 [his-69&his-70(uge44) III; his-72(tm2066) III; his-74(uge18) V; his-71(ok2289) X]) comparing to in N2 animals at embryo stage.

WBPaper00054191:H3.3(null)_embryo_downregulated

Differentially expressed genes were estimated using a General Linear Model approach, negative binomial distribution, and a quasi-likelihood F-test. Genes with a P-value < 0.05 and fold change > 1 were considered significant. Transcripts that showed significantly decreased expression in H3.3 null mutant animals (FAS43 [his-69&his-70(uge44) III; his-72(tm2066) III; his-74(uge18) V; his-71(ok2289) X]) comparing to in N2 animals at embryo stage.

WBPaper00055013:HMG-4_interacting_protein

N.A. Proteins that interact with HMG-4-HA in BAT1967 [hmg-4(bar32[hmg-4-3xHA]) III] at L4 larva stage according to Co-Immunoprecipitation with subsequent Mass Spectrometry analysis.

WBPaper00054191:H3.3(null)_L1_downregulated

Differentially expressed genes were estimated using a General Linear Model approach, negative binomial distribution, and a quasi-likelihood F-test. Genes with a P-value < 0.05 and fold change > 1 were considered significant. Transcripts that showed significantly decreased expression in H3.3 null mutant animals (FAS43 [his-69&his-70(uge44) III; his-72(tm2066) III; his-74(uge18) V; his-71(ok2289) X]) comparing to in N2 animals at L1 larva stage.