- WBPaper00065560:E.coli-HB101_downregulated_F3
Differentially expressed genes were extracted using DESeq, version 1.10.1. Assembly: PRJNA13758.WBPS13
Transcripts downregulated in F3 generation of transgenic C. elegans expressing human alpha-syn in DA neurons fed HB101 0E. coli vs. OP50.
- WBPaper00065560:E.coli-HB101_upregulated_P0
Differentially expressed genes were extracted using DESeq, version 1.10.1. Assembly: PRJNA13758.WBPS13
Transcripts upregulated in P0 generation of transgenic C. elegans expressing human alpha-syn in DA neurons fed HB101 0E. coli vs. OP50.
- WBPaper00065560:E.coli-HB101_upregulated_F3
Differentially expressed genes were extracted using DESeq, version 1.10.1. Assembly: PRJNA13758.WBPS13
Transcripts upregulated in F3 generation of transgenic C. elegans expressing human alpha-syn in DA neurons fed HB101 0E. coli vs. OP50.
- WBPaper00065560:E.coli-HB101_downregulated_P0
Differentially expressed genes were extracted using DESeq, version 1.10.1. Assembly: PRJNA13758.WBPS13
Transcripts downregulated in P0 generation of transgenic C. elegans expressing human alpha-syn in DA neurons fed HB101 0E. coli vs. OP50.
- WBPaper00061651:DA_enriched
Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.
Transcripts enriched in DA according to single cell RNAseq.
- WBPaper00050514:CEBP-1_interacting
CHIP-seq. Authors conducted peak calling using a CLC Genomics Workbench 6.0.
Transcripts physically interacting with CEBP-1 protein, according to CHIP-Seq analysis by immunoprecipitating FLAG-CEBP-1-associated withh DA fragments using anti-FLAG antibody.
- [cgc6390]:Cluster_D
hierarchical clustering
Germline-enriched and sex-biased expression profile cluster D.
- WBPaper00033070:Elbe_downregulated
[ANOVA, p < 0.05 without multiple sample correction, fold-change to reference sediment Danube (D) > 1.4 (up-regulated) or < 0.7 (down-regulated)].
Genes with significantly changing transcripts in C. elegans exposed to the Elbe (E) sediment.
- WBPaper00033070:Elbe_upregulated
[ANOVA, p < 0.05 without multiple sample correction, fold-change to reference sediment Danube (D) > 1.4 (up-regulated) or < 0.7 (down-regulated)].
Genes with significantly changing transcripts in C. elegans exposed to the Elbe (E) sediment.