- WBPaper00041906:I-3690_vs_I-4317_OP50_3d
Differential expression was assayed via limma. Genes were considered differentially expressed when the multiple testing adjusted P-value < 0.01.
Differentially expressed genes between C.elegans fed with L.rhamnosus strain CNCM I-3690 and CNCM I-4317 strains and with CNCM I-3690 and control strain E.coli OP50 after 3 days of feeding.
- WBPaper00064850:glh-1(sam65)_downregulated
DESeq2, fold change > 2, FDR < 0.05.
Transcripts that showed significantly decreasedexpression in DUP144[glh-1(sam65[glh-1(deletion)-gfp-3xFlag])] I comparing to in wild type control DUP64[glh-1(sam24[glh-1-gfp-3xFlag])] I.
- WBPaper00064850:glh-1(sam65)_upregulated
DESeq2, fold change > 2, FDR < 0.05.
Transcripts that showed significantly increasedexpression in DUP144[glh-1(sam65[glh-1(deletion)-gfp-3xFlag])] I comparing to in wild type control DUP64[glh-1(sam24[glh-1-gfp-3xFlag])] I.
- WBPaper00041906:I-3690_I-4317_vs_OP50_10d
Differential expression was assayed via limma. Genes were considered differentially expressed when the multiple testing adjusted P-value < 0.01.
Differentially expressed genes between C.elegans fed with L.rhamnosus strain CNCM I-3690 and L.rhamnosus strain CNCM I-4317 after 10 days of feeding.
- WBPaper00041906:I-3690_I-4317_vs_OP50_3d
Differential expression was assayed via limma. Genes were considered differentially expressed when the multiple testing adjusted P-value < 0.01.
Genes differentially expressed between C.elegans fed with L.rhamnosus strain CNCM I-3690 and CNCM I-4317 and not found in C. elegans fed with OP50 control strain after 3 days of feeding.
- WBPaper00026640:Development_Group_I
N.A.
Expression of development group I were relatively stable throughout the life cycle, oscillating within the range of 0.3 in log abundance.
- WBPaper00050094:glp-1(gf)_downregulated
Fold change > 2.
Transcripts that showed significantly decreased expression in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(ar202)(III) (glp-1(gf) NOTCH ON), comparing to in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(e2144) (glp-1(lf) NOTCH OFF)
- WBPaper00050094:glp-1(gf)_upregulated
Fold change > 2.
Transcripts that showed significantly increased expression in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(ar202)(III) (glp-1(gf) NOTCH ON), comparing to in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(e2144) (glp-1(lf) NOTCH OFF)
- WBPaper00046421:cdc-48.2(tm659)_upregulated
Data are presented as mean SEM of at least three separate experiments if not specified otherwise and compared with multiple t-test corrected using the Holm-Sidak method for C. elegans experiments or the one-way analysis of variance (ANOVA) followed by Dunnett's multiple comparison tests for experiments on mammalian cells. The significance was set at P value < 0.05. All statistical analyses were performed using GraphPad Prism (version 6) statistical software (GraphPad Software; San Diego).
Proteins that showed significantly increased expression in cdc-48.2 (EM2[dpy-5(e907); cdc-48.2(tm659); sIs13872[ckb-2p::gfp, pCeh361]]) comparing to in WT (BC14636[dpy-5(e907); sIs13872[ckb-2p::gfp, pCeh361]]) upon tunicamycin treatment.