[cgc6390]:Cluster_F

hierarchical clustering Germline-enriched and sex-biased expression profile cluster F.

[cgc5767]:expression_class_M

A modified Welch F statistic was used for ANOVA. For each gene, regressed error estimates were substituted for observed error estimates. The substitution is justified by the lack of consistency among the most and least variable genes at each time point. Regressed error estimates were abundance-dependent pooled error estimates that represented a median error estimate from a window of genes of similar abundance to the gene of interest. A randomization test was used to compute the probability Pg of the observed F statistic for gene g under the null hypothesis that developmental time had no effect on expression. P-values were not corrected for multiple testing. Maternal class (M): genes that are called present in at least one of the three PC6 replicates.

WBPaper00060871:M.humicola-infection_12h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 12 hours after animals were infected by M. humicola.

WBPaper00060871:M.humicola-infection_24h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 24 hours after animals were infected by M. humicola.

WBPaper00060871:M.humicola-infection_48h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 48 hours after animals were infected by M. humicola.

WBPaper00060871:M.humicola-extract_24h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 24 hours after animals were exposed to M. humicola extract.

WBPaper00060871:M.humicola-extract_12h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 12 hours after animals were exposed to M. humicola extract.

WBPaper00060871:M.humicola-extract_1h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression one hour after animals were exposed to M. humicola extract.

WBPaper00060871:M.humicola-extract_4h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 4 hours after animals were exposed to M. humicola extract.

WBPaper00024704:Soluble_protein

N.A. Soluble proteins identified according to HPLC electrospray ionization (ESI)-MS-MS, using the method in which the protein mixtures were first derivatized with a water-soluble fluorogenic reagent, SBD-F or 7-chloro-4-(dimethylaminoethylaminosulfonyl)-2,1,3-benzoxadiazole (DAABD-Cl).