- WBPaper00040990:PA14_downregulated
Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%).
Genes with expression level repressed by bacteria strain PA14.
- WBPaper00040990:PA14_upregulated
Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%).
Genes with expression level induced by bacteria strain PA14.
- WBPaper00061357:mett-10(ok2204)_upregulated_NA22
DESeq2, p-value < 0.05, fold change > 2.
Transcripts that showed significantly increased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on peptone-rich (NA22) plates.