- WBPaper00049594:osm-9(ok1677)_upregulated
Differentially expressed genes were determined using read counts per gene and a P-value threshold of < 0.05 with edgeR version 3.2.4.
Putative proteostasis genes differentially upregulated in osm-9(ok1677) worms under control conditions.
- WBPaper00038118:aak-2(gt33)_upregulated
Audic-Claverie test of statistical significance using normalized read frequencies (i.e. Normalized number of reads per gene = number of reads mapped to a gene * the read length (36 bases)/the gene length/total number of reads in the library) of commonly identified genes. Genes that had p-values less than 0.01 and log2 expression level ratios greater than 0.7 (Minimum of ~1.5 difference) for every comparison were selected as differentially expressed.
Significantly up-regulated genes in unstressed aak-2(gt33) relative to N2.
- WBPaper00038118:aak-2(gt33)_downregulated
Audic-Claverie test of statistical significance using normalized read frequencies (i.e. Normalized number of reads per gene = number of reads mapped to a gene * the read length (36 bases)/the gene length/total number of reads in the library) of commonly identified genes. Genes that had p-values less than 0.01 and log2 expression level ratios greater than 0.7 (Minimum of ~1.5 difference) for every comparison were selected as differentially expressed.
Significantly down-regulated genes in unstressed aak-2(gt33) relative to N2.
- WBPaper00038118:stress_downregulated_N2
Audic-Claverie test of statistical significance using normalized read frequencies (i.e. Normalized number of reads per gene = number of reads mapped to a gene * the read length (36 bases)/the gene length/total number of reads in the library) of commonly identified genes. Genes that had p-values less than 0.01 and log2 expression level ratios greater than 0.7 (Minimum of ~1.5 difference) for every comparison were selected as differentially expressed.
Genes that were significantly down regulated in stressed N2 relative to unstressed N2.
- WBPaper00045090:RDE-12_dependent
N.A.
Target genes whose small RNA levels are reduced more than 3-fold in the rde-12 mutants compared to N2 in the ERGO-1 and RDE-1 pathways. The minimal read cutoff is 20 in this analysis
- WBPaper00038118:stress_upregulated_N2
Audic-Claverie test of statistical significance using normalized read frequencies (i.e. Normalized number of reads per gene = number of reads mapped to a gene * the read length (36 bases)/the gene length/total number of reads in the library) of commonly identified genes. Genes that had p-values less than 0.01 and log2 expression level ratios greater than 0.7 (Minimum of ~1.5 difference) for every comparison were selected as differentially expressed.
Genes that were significantly up regulated in stressed N2 relative to unstressed N2.
- WBPaper00049594:osm-9(ok1677)_NaCl(200mM)_upregulate
Differentially expressed genes were determined using read counts per gene and a P-value threshold of < 0.05 with edgeR version 3.2.4.
Putative proteostasis genes differentially upregulated in osm-9(ok1677) worms following a 6 h exposure to 200 mM NaCl.
- WBPaper00062167:mbl-1(tm1563)_upregulated
Differential expression analysis was performed using the EdgeR package after normalizing read counts and including only those genes with CPM > 1 for at least one out of all samples.
Transcripts that showed significantly increased expression in mbl-1(tm1563) comparing to in N2 animals.
- WBPaper00062167:mbl-1(tm1563)_downregulated
Differential expression analysis was performed using the EdgeR package after normalizing read counts and including only those genes with CPM > 1 for at least one out of all samples.
Transcripts that showed significantly decreased expression in mbl-1(tm1563) comparing to in N2 animals.
- WBPaper00045618:fbf-1_upregulated
DEXSeq (version 1.2.0) was used for differential expression analysis, with FDR cutoff of <0.01 and a minimum fold change requirement of 2-fold and excluded transcripts with <10 read counts.
Transcripts more abundant in puf-8(q725) fbf-1(ok91);lip-1(zh15) than in puf-8(q725);lip-1(zh15).