WBPaper00050514:CEBP-1_interacting

CHIP-seq. Authors conducted peak calling using a CLC Genomics Workbench 6.0. Transcripts physically interacting with CEBP-1 protein, according to CHIP-Seq analysis by immunoprecipitating FLAG-CEBP-1-associated withh DA fragments using anti-FLAG antibody.

WBPaper00044736:flat_dev_expression

The following three lines of R code were used to perform the classification: increasing <-2*amplitude-PC1 < -1.7; oscillating <-!increasing & (amplitude > 0.55); flat <-!increasing & !oscillating; Note that the amplitude of a sinusoidal wave corresponds to only half the fold change between trough and peak. Genes that showed flat mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.

WBPaper00044736:rising_dev_expression

The following three lines of R code were used to perform the classification: increasing <-2*amplitude-PC1 < -1.7; oscillating <-!increasing & (amplitude > 0.55); flat <-!increasing & !oscillating; Note that the amplitude of a sinusoidal wave corresponds to only half the fold change between trough and peak. Genes that showed rising mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.

WBPaper00044736:oscillating_dev_expression

The following three lines of R code were used to perform the classification: increasing <-2*amplitude-PC1 < -1.7; oscillating <-!increasing & (amplitude > 0.55); flat <-!increasing & !oscillating; Note that the amplitude of a sinusoidal wave corresponds to only half the fold change between trough and peak. Genes that showed oscillating mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.

WBPaper00060871:M.humicola-infection_12h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 12 hours after animals were infected by M. humicola.

WBPaper00060871:M.humicola-infection_24h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 24 hours after animals were infected by M. humicola.

WBPaper00060871:M.humicola-infection_48h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 48 hours after animals were infected by M. humicola.

WBPaper00060871:M.humicola-extract_24h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 24 hours after animals were exposed to M. humicola extract.

WBPaper00060871:M.humicola-extract_12h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression 12 hours after animals were exposed to M. humicola extract.

WBPaper00060871:M.humicola-extract_1h_regulated

Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1). Transcripts that showed significantly altered expression one hour after animals were exposed to M. humicola extract.