WBPaper00028788:No_Response_to_MPK-1

Hierarchical clustering and the Cluster and Treeview programs were used. Genes shown no response to MPK-1 signaling.

WBPaper00059728:5ug_cholesterol_downregulated

DESeq2 Transcripts that showed significantly decreased expression when grown with 5ug per ml cholesterol supplementation, comparing to animals grown with no cholesterol supplementation.

WBPaper00059728:5ug_cholesterol_upregulated

DESeq2 Transcripts that showed significantly increased expression when grown with 5ug per ml cholesterol supplementation, comparing to animals grown with no cholesterol supplementation.

WBPaper00050726:OsmoticStress_regulated_NoFood

DESeq(version 1.10.1), FDR < 0.05. Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when no food was present

WBPaper00040184:hcf-1down_sir-2.1nc_daf-2nc

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes downregulated in hcf-1(-), no change in sir-2.1(O/E) and no change in daf-2(-).

WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes with no change in hcf-1(-), no change in sir-2.1(O/E) and downregulated in daf-2(-).

WBPaper00040184:hcf-1nc_sir-2.1up_daf-2nc

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes with no change in hcf-1(-), upregulated in sir-2.1(O/E) and no change in daf-2(-).

WBPaper00040184:hcf-1nc_sir-2.1down_daf-2nc

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes with no change in hcf-1(-), downregulated in sir-2.1(O/E) and no change in daf-2(-).

WBPaper00040184:hcf-1up_sir-2.1nc_daf-2nc

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes upregulated in hcf-1(-), no change in sir-2.1(O/E) and no change in daf-2(-).

WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up

To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Genes with no change in hcf-1(-), no change in sir-2.1(O/E) and upregulated in daf-2(-).