WBPaper00064107:lin-52(3A)_vs_lin-52(WT)_downregulated

DESeq2, Fold < -1.5 or > 1.5, q <0.05 Transcripts that showed significantly decreased expression in lin-52(3A)/lin-52(bn151(lin-52[L42A,C44A,E46A]-GFP-3xFLAG)) comparing to in lin-52(WT)/lin-52(bn139[lin-52-GFP-3xFLAG]).

WBPaper00064107:lin-52(3A)_vs_lin-52(WT)_upregulated

DESeq2, Fold < -1.5 or > 1.5, q <0.05 Transcripts that showed significantly increased expression in lin-52(3A)/lin-52(bn151(lin-52[L42A,C44A,E46A]-GFP-3xFLAG)) comparing to in lin-52(WT)/lin-52(bn139[lin-52-GFP-3xFLAG]).

WBPaper00053289:DREAM-target

N.A. Transcripts with promoter regions binding DREAM protein complex, according to ChIP-seq of E2F-DP (DPL-1 and EFL-1) and MuvB (LIN-9, LIN-37, LIN-52, and LIN-54) of N2 late embryo.

WBPaper00035892:Y.pestis_regulated

ANOVA t-test and fold-change calculations were performed using GeneSpring software. Genes changed expression level after Y. pestis KIM5 treatment. P-value < 0.05.

WBPaper00045865:biofilm_upregulated_A

Results are presented as the relative up- or downregulation for genes with a difference of 2 fold or more after analyzing expression and using confidence limits with multiple testing corrections (Benjamini-Hochberg FDR). Genes that significantly increased expression 1 our after biofilm was formed by Y. pseudotuberculosis YP III comparing to worms infected by Y. pseudotuberculosis 3384 mutant (that do not form biofilm)

WBPaper00045865:biofilm_downregulated_A

Results are presented as the relative up- or downregulation for genes with a difference of 2 fold or more after analyzing expression and using confidence limits with multiple testing corrections (Benjamini-Hochberg FDR). Genes that significantly decreased expression 1 our after biofilm was formed by Y. pseudotuberculosis YP III comparing to worms infected by Y. pseudotuberculosis 3384 mutant (that do not form biofilm)

WBPaper00035892:KIM5_vs_OP50_Down

ANOVA t-test and fold-change calculations were performed using GeneSpring software. Genes down-regulated greater than 2-fold, demonstrating a robust inducible response to Y. pestis.

WBPaper00060084:cco-1(RNAi)_upregulated_lin-40(yth27)

N.A. Transcripts that showed significantly increased expression in lin-40(yth27);cco-1(RNAi) animals comparing to lin-40(yth27) animals injected with empty vector.

WBPaper00060084:cco-1(RNAi)_downregulated_lin-40(yth27)

N.A. Transcripts that showed significantly decreased expression in lin-40(yth27);cco-1(RNAi) animals comparing to lin-40(yth27) animals injected with empty vector.

WBPaper00035892:KIM5_vs_OP50_Up

ANOVA t-test and fold-change calculations were performed using GeneSpring software. Genes up-regulated greater than 2-fold, demonstrating a robust inducible response to Y. pestis KIM5.