- WBPaper00048637:lin-35(n745)_starvation_downregulated
Statistical t-test: P < 0.015 for lin-35(n745) analysis with a threshold of 2-fold ratio of mis-regulation.
Genes with significantly decreased expression in lin-35(n745) comparing to in N2 in starvation condition.
- WBPaper00048637:lin-35(n745)_starvation_upregulated
Statistical t-test: P < 0.015 for lin-35(n745) analysis with a threshold of 2-fold ratio of mis-regulation.
Genes with significantly increased expression in lin-35(n745) comparing to in N2 in starvation condition.
- WBPaper00040932:lin-28_regulated_microRNA
Paired t-test. Genes with p-value < 0.05 and fold change >= 1.5 were considered differentially expressed.
MicroRNA that showed differential expression for more than 1.5 fold in the absence of lin-28.
- WBPaper00038427:lin-54_embryo_changed
To determine differentially expressed genes between wild-type and mutants, moderated T Statistics in limma was used with p-value <= 0.01, fold change >= 1.5.
Genes with changed expression in lin-54(n2290) embryo.
- WBPaper00038427:lin-54_germline_changed
To determine differentially expressed genes between wild-type and mutants, moderated T Statistics in limma was used with p-value <= 0.01, fold change >= 1.5.
Genes with changed expression in lin-54(n3423) germline.
- WBPaper00064107:lin-52(3A)_vs_lin-52(WT)_downregulated
DESeq2, Fold < -1.5 or > 1.5, q <0.05
Transcripts that showed significantly decreased expression in lin-52(3A)/lin-52(bn151(lin-52[L42A,C44A,E46A]-GFP-3xFLAG)) comparing to in lin-52(WT)/lin-52(bn139[lin-52-GFP-3xFLAG]).
- WBPaper00064107:lin-52(3A)_vs_lin-52(WT)_upregulated
DESeq2, Fold < -1.5 or > 1.5, q <0.05
Transcripts that showed significantly increased expression in lin-52(3A)/lin-52(bn151(lin-52[L42A,C44A,E46A]-GFP-3xFLAG)) comparing to in lin-52(WT)/lin-52(bn139[lin-52-GFP-3xFLAG]).
- WBPaper00050412:cco-1(RNAi)_upregulated_lin-65(n3441)
DESeq. Statistical significance was defined by a Benjamini-Hochberg adjusted p-value of less than 0.05.
Transcripts that showed significantly increased expression in cco-1(RNAi) comaring to control(RNAi) in lin-65(n3441) animals.
- WBPaper00050412:cco-1(RNAi)_downregulated_lin-65(n3441)
DESeq. Statistical significance was defined by a Benjamini-Hochberg adjusted p-value of less than 0.05.
Transcripts that showed significantly decreased expression in cco-1(RNAi) comaring to control(RNAi) in lin-65(n3441) animals.
- WBPaper00053289:DREAM-target
N.A.
Transcripts with promoter regions binding DREAM protein complex, according to ChIP-seq of E2F-DP (DPL-1 and EFL-1) and MuvB (LIN-9, LIN-37, LIN-52, and LIN-54) of N2 late embryo.