- WBPaper00061340:K_Kprime
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in K cell, K' cell according to single cell RNAseq.
- WBPaper00040990:PA14_downregulated
Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%).
Genes with expression level repressed by bacteria strain PA14.
- WBPaper00040990:PA14_upregulated
Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%).
Genes with expression level induced by bacteria strain PA14.