- [cgc6390]:Cluster_D
hierarchical clustering
Germline-enriched and sex-biased expression profile cluster D.
- WBPaper00052868:ALA_downregulated
Genes showing a p-value < 0.05 after adjustment for multiple testing using the Benjamini-Hochberg method were considered to be differentially expressed.
Transcripts that showed significantly decreased expression after exposure to 5mM w-3 fatty acid alpha-linolenic acid (ALA) for 18 hours.
- WBPaper00052868:ALA_upregulated
Genes showing a p-value < 0.05 after adjustment for multiple testing using the Benjamini-Hochberg method were considered to be differentially expressed.
Transcripts that showed significantly increased expression after exposure to 5mM w-3 fatty acid alpha-linolenic acid (ALA) for 18 hours.
- WBPaper00061340:G2_and_W_blasts
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in G2, W cell according to single cell RNAseq.
- WBPaper00033070:Elbe_downregulated
[ANOVA, p < 0.05 without multiple sample correction, fold-change to reference sediment Danube (D) > 1.4 (up-regulated) or < 0.7 (down-regulated)].
Genes with significantly changing transcripts in C. elegans exposed to the Elbe (E) sediment.
- WBPaper00033070:Elbe_upregulated
[ANOVA, p < 0.05 without multiple sample correction, fold-change to reference sediment Danube (D) > 1.4 (up-regulated) or < 0.7 (down-regulated)].
Genes with significantly changing transcripts in C. elegans exposed to the Elbe (E) sediment.
- WBPaper00033070:Rhine_downregulated
[ANOVA, p < 0.05 without multiple sample correction, fold-change to reference sediment Danube (D) > 1.4 (up-regulated) or < 0.7 (down-regulated)].
Genes with significantly changing transcripts in C. elegans exposed to the Rhine (R) sediment.
- WBPaper00033070:Rhine_upregulated
[ANOVA, p < 0.05 without multiple sample correction, fold-change to reference sediment Danube (D) > 1.4 (up-regulated) or < 0.7 (down-regulated)].
Genes with significantly changing transcripts in C. elegans exposed to the Rhine (R) sediment.
- WBPaper00061040:FW1256_upregulated
The DESeq2 package (v1.24.0) was used to identify differentially expressed genes (DEGs). Fold change > 2, FDR < 0.05.
Transcripts that showed significantly increased expression after animals were exposed to 500 uM of 3-dihydro-2-phenyl-sulfanylenebenzo[d] [1,3,2]-oxazaphosphole (FW1256) from L1 stage larvae onwards.