- WBPaper00060871:M.humicola-infection_12h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 12 hours after animals were infected by M. humicola.
- WBPaper00060871:M.humicola-infection_24h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 24 hours after animals were infected by M. humicola.
- WBPaper00060871:M.humicola-infection_48h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 48 hours after animals were infected by M. humicola.
- WBPaper00060871:M.humicola-extract_24h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 24 hours after animals were exposed to M. humicola extract.
- WBPaper00060871:M.humicola-extract_12h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 12 hours after animals were exposed to M. humicola extract.
- WBPaper00060871:M.humicola-extract_1h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression one hour after animals were exposed to M. humicola extract.
- WBPaper00060871:M.humicola-extract_4h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 4 hours after animals were exposed to M. humicola extract.
- WBPaper00061340:M_cell
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in M cell according to single cell RNAseq.
- WBPaper00050332:juglone_upregulated
Using the Cufflink package and CuffDiff application from Galaxy, FPKM (Fragments Per Kilobase of transcript per Million mapped reads) were calculated and tested for differential expression with a FDR score of 5%.
Transcripts that showed significantly increased expression after exposed to 38 M juglone for 3 hours.