WBPaper00041906:I-3690_vs_I-4317_OP50_3d

Differential expression was assayed via limma. Genes were considered differentially expressed when the multiple testing adjusted P-value < 0.01. Differentially expressed genes between C.elegans fed with L.rhamnosus strain CNCM I-3690 and CNCM I-4317 strains and with CNCM I-3690 and control strain E.coli OP50 after 3 days of feeding.

WBPaper00064850:glh-1(sam65)_downregulated

DESeq2, fold change > 2, FDR < 0.05. Transcripts that showed significantly decreasedexpression in DUP144[glh-1(sam65[glh-1(deletion)-gfp-3xFlag])] I comparing to in wild type control DUP64[glh-1(sam24[glh-1-gfp-3xFlag])] I.

WBPaper00064850:glh-1(sam65)_upregulated

DESeq2, fold change > 2, FDR < 0.05. Transcripts that showed significantly increasedexpression in DUP144[glh-1(sam65[glh-1(deletion)-gfp-3xFlag])] I comparing to in wild type control DUP64[glh-1(sam24[glh-1-gfp-3xFlag])] I.

WBPaper00041906:I-3690_I-4317_vs_OP50_10d

Differential expression was assayed via limma. Genes were considered differentially expressed when the multiple testing adjusted P-value < 0.01. Differentially expressed genes between C.elegans fed with L.rhamnosus strain CNCM I-3690 and L.rhamnosus strain CNCM I-4317 after 10 days of feeding.

WBPaper00055013:HMG-3_interacting_transcript

N.A. Transcripts that interact with HMG-3-HA in BAT1753 [hmg-3(bar24[hmg-3-3xHA]) I] at L4 larva stage.

WBPaper00041906:I-3690_I-4317_vs_OP50_3d

Differential expression was assayed via limma. Genes were considered differentially expressed when the multiple testing adjusted P-value < 0.01. Genes differentially expressed between C.elegans fed with L.rhamnosus strain CNCM I-3690 and CNCM I-4317 and not found in C. elegans fed with OP50 control strain after 3 days of feeding.

WBPaper00026640:Development_Group_I

N.A. Expression of development group I were relatively stable throughout the life cycle, oscillating within the range of 0.3 in log abundance.

WBPaper00050094:glp-1(gf)_downregulated

Fold change > 2. Transcripts that showed significantly decreased expression in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(ar202)(III) (glp-1(gf) NOTCH ON), comparing to in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(e2144) (glp-1(lf) NOTCH OFF)

WBPaper00050094:glp-1(gf)_upregulated

Fold change > 2. Transcripts that showed significantly increased expression in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(ar202)(III) (glp-1(gf) NOTCH ON), comparing to in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(e2144) (glp-1(lf) NOTCH OFF)

WBPaper00006465:I_ethanol_rapid_induction

Class I consists of genes whose transcription levels increased rapidly at a very early stage and were maintained at high levels up to 6 h exposure.