- WBPaper00065623:66
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 66 expressed in: Hypodermis head.
- WBPaper00056826:SGP_biased
DESeq2, fold change >= 2, FDR <= 0.01.
Transcripts that showed significantly higher expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc).
- WBPaper00056826:hmc_biased
DESeq2, fold change >= 2, FDR <= 0.01.
Transcripts that showed significantly lower expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc).
- WBPaper00061340:hmc_homolog
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in head mesodermal cell according to single cell RNAseq.
- WBPaper00061340:hmc_and_homolog
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in head mesodermal cell, MSpppaaa according to single cell RNAseq.
- WBPaper00061340:hmc
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in head mesodermal cell according to single cell RNAseq.
- WBPaper00040221:DAF-12_target_ALF9
Affymetrix TAS software that computed for each probe estimates of fold enrichment (in linear scale) over hybridization with input DNA. At the same time, TAS calculated for each probe a p-value by applying a Wilcoxon signed rank test. A threshold of 2.5 was selected, which corresponds to probe intensities approximately 2.5 times stronger on the ChIP array than on the Input array. Additional TAS threshold parameters were MinRun=180 bp, MaxGap=300 bp. TAS analysis showed that the selected threshold of 2.5 corresponds approximately to a p-value of 0.01.
Potental DAF-12 target genes identified by ChIP-chip analysis performed on strain ALF9 [daf-12
- WBPaper00040221:DAF-12_target_ALF4
Affymetrix TAS software that computed for each probe estimates of fold enrichment (in linear scale) over hybridization with input DNA. At the same time, TAS calculated for each probe a p-value by applying a Wilcoxon signed rank test. A threshold of 2.5 was selected, which corresponds to probe intensities approximately 2.5 times stronger on the ChIP array than on the Input array. Additional TAS threshold parameters were MinRun=180 bp, MaxGap=300 bp. TAS analysis showed that the selected threshold of 2.5 corresponds approximately to a p-value of 0.01.
Potental DAF-12 target genes identified by ChIP-chip analysis performed on strain ALF4 [daf-12